Merge branch 'main' into features/1632-support_I/O_with_zarr

.github/workflows/ReceivePR.yml

@@ -20,7 +20,7 @@ jobs:
       - uses: actions/[email protected]
 
       - name: Use Python
-        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
+        uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5.4.0
         with:
           python-version: 3.9
           architecture: x64

.github/workflows/ci.yaml

@@ -49,7 +49,7 @@ jobs:
         with:
           mpi: ${{ matrix.mpi }}
       - name: Use Python ${{ matrix.py-version }}
-        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
+        uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5.4.0
         with:
           python-version: ${{ matrix.py-version }}
           architecture: x64

.github/workflows/codeql.yml

@@ -50,7 +50,7 @@ jobs:
 
       # Initializes the CodeQL tools for scanning.
       - name: Initialize CodeQL
-        uses: github/codeql-action/init@b6a472f63d85b9c78a3ac5e89422239fc15e9b3c # v3.28.1
+        uses: github/codeql-action/init@dd746615b3b9d728a6a37ca2045b68ca76d4841a # v3.28.8
         with:
           languages: ${{ matrix.language }}
           # If you wish to specify custom queries, you can do so here or in a config file.
@@ -60,7 +60,7 @@ jobs:
       # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
       # If this step fails, then you should remove it and run the build manually (see below)
       - name: Autobuild
-        uses: github/codeql-action/autobuild@b6a472f63d85b9c78a3ac5e89422239fc15e9b3c # v3.28.1
+        uses: github/codeql-action/autobuild@dd746615b3b9d728a6a37ca2045b68ca76d4841a # v3.28.8
 
       # ℹ️ Command-line programs to run using the OS shell.
       # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
@@ -73,6 +73,6 @@ jobs:
       #   ./location_of_script_within_repo/buildscript.sh
 
       - name: Perform CodeQL Analysis
-        uses: github/codeql-action/analyze@b6a472f63d85b9c78a3ac5e89422239fc15e9b3c # v3.28.1
+        uses: github/codeql-action/analyze@dd746615b3b9d728a6a37ca2045b68ca76d4841a # v3.28.8
         with:
           category: "/language:${{matrix.language}}"

.github/workflows/docker.yml

@@ -37,7 +37,7 @@ jobs:
               uses: docker/setup-qemu-action@53851d14592bedcffcf25ea515637cff71ef929a # v3.3.0
             -
               name: Set up Docker Buildx
-              uses: docker/setup-buildx-action@c47758b77c9736f4b2ef4073d4d51994fabfe349 # v3.7.1
+              uses: docker/setup-buildx-action@6524bf65af31da8d45b59e8c27de4bd072b392f5 # v3.8.0
               with:
                 driver: docker
             -
@@ -49,7 +49,7 @@ jobs:
                 password: ${{ secrets.GITHUB_TOKEN }}
             -
               name: Build
-              uses: docker/build-push-action@67a2d409c0a876cbe6b11854e3e25193efe4e62d # v6.12.0
+              uses: docker/build-push-action@ca877d9245402d1537745e0e356eab47c3520991 # v6.13.0
               with:
                 file: docker/Dockerfile.release
                 build-args: |
@@ -65,7 +65,7 @@ jobs:
                 docker run -v `pwd`:`pwd` -w `pwd` --rm test_${{ inputs.name }} pytest
             -
               name: Build and push
-              uses: docker/build-push-action@67a2d409c0a876cbe6b11854e3e25193efe4e62d # v6.12.0
+              uses: docker/build-push-action@ca877d9245402d1537745e0e356eab47c3520991 # v6.13.0
               with:
                 file: docker/Dockerfile.release
                 build-args: |

.github/workflows/inactivity.yml

@@ -18,7 +18,7 @@ jobs:
         with:
           egress-policy: audit
 
-      - uses: actions/stale@28ca1036281a5e5922ead5184a1bbf96e5fc984e # v9.0.0
+      - uses: actions/stale@5bef64f19d7facfb25b37b414482c7164d639639 # v9.1.0
         with:
           days-before-issue-stale: 60
           days-before-issue-close: 60

.github/workflows/scorecard.yml

@@ -72,6 +72,6 @@ jobs:
 
       # Upload the results to GitHub's code scanning dashboard.
       - name: "Upload to code-scanning"
-        uses: github/codeql-action/upload-sarif@b6a472f63d85b9c78a3ac5e89422239fc15e9b3c # v3.28.1
+        uses: github/codeql-action/upload-sarif@dd746615b3b9d728a6a37ca2045b68ca76d4841a # v3.28.8
         with:
           sarif_file: results.sarif