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Merge pull request from googlegenomics/staging-2 #146

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Feb 14, 2017
Merged

Merge pull request from googlegenomics/staging-2 #146

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d80bbf4
Update analyze_variants_with_bigquery.rst to use Standard SQL instead of
mbookman Jan 10, 2017
2d66e59
Updated formatting per review feedback.
mbookman Jan 26, 2017
a74d7ba
Update the display size of an image.
mbookman Jan 26, 2017
cf81c0d
Minor updates after having followed instructions
melissachang Feb 14, 2017
7f97fa7
Minor updates after having followed instructions
melissachang Feb 14, 2017
b18e230
Merge branch 'staging-2' of https://github.com/googlegenomics/readthe…
mbookman Feb 14, 2017
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8 changes: 4 additions & 4 deletions docs/source/use_cases/setup_gridengine_cluster_on_compute_engine/index.rst
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Expand Up @@ -130,7 +130,7 @@ The script also saves away changed environment variables and installs a ``deacti
cd elasticluster
git clone git://github.com/gc3-uzh-ch/elasticluster.git src
cd src
python setup.py install
pip install -e .

b. From github (googlegenomics fork)

Expand All @@ -139,7 +139,7 @@ The script also saves away changed environment variables and installs a ``deacti
cd elasticluster
git clone https://github.com/googlegenomics/elasticluster.git src
cd src
python setup.py install
pip install -e .

.. _index--create-your-cluster-definition-file:

Expand Down Expand Up @@ -233,7 +233,7 @@ Instructions for ensuring your SSH keypair exists can be found
login=google-login
setup_provider=ansible-gridengine
security_group=default
image_id=****REPLACE WITH OUTPUT FROM: gcloud compute images list | grep ^backports-debian | cut -f 1 -d " "****
image_id=****REPLACE WITH OUTPUT FROM: gcloud compute images list | grep debian | cut -f 1 -d " "****
flavor=n1-standard-1
frontend_nodes=1
compute_nodes=3
Expand Down Expand Up @@ -423,4 +423,4 @@ To update your installation, active the virtualenv, pull the source from GitHub,
source elasticluster/bin/activate
cd elasticluster/src
git pull
python setup.py install
pip install -e .