Updated preprocessing module and fixed minor bugs

.gitignore

@@ -5,6 +5,7 @@
 .DS_Store
 .quarto
 # folders
+exampledata/
 fastqs/
 bams/
 fastq_files/
@@ -17,12 +18,4 @@ countmatrices/
 datasets/T8/
 datasets/Tox/
 # R files
-R/steps_2_create_pkg.R
-R/apptest.R
-R/appglue.R
-R/countingT8.R
-R/counting.R
-R/countingbase.R
-R/countingall.R
-R/shinyselect_michael.R
-R/app_v1.R
+R/2023-11-07-Analysis-UWB-zeros-removed-GGiner copy.Rmd

NAMESPACE

@@ -1,2 +1,11 @@
-# Generated by roxygen2: do not edit by hand
+# Import the entire shiny and DT packages
+import(shiny)
+import(DT)
 
+# Import specific functions from other packages
+importFrom(stats, rnorm, runif)    # Example functions from stats (if used)
+importFrom(utils, read.csv, globalVariables)   # For file reading or declaring global variables
+
+# Declare global variables to avoid warnings during R CMD check
+globalVariables(c("reactiveVal", "renderPlot", "renderDataTable", 
+                  "dataTableOutput", "textInput", "datatable"))