add pubs

publications.md

@@ -7,27 +7,28 @@ layout: page
 
 Richichi C, Fornasari L, **Melloni GEM**, Brescia P, Patanè M, Del Bene M, Mustafa DAM, Kros JM, Pollo B, Pruneri G, Sciandivasci A, Munzone E, DiMeco F, Pelicci PG, Riva L, Pelicci G. Mutations targeting the coagulation pathway are enriched in brain metastases *Scientific Reports* 7, Article number: 6573 (2017) doi:10.1038/s41598-017-06811-x
 
-**Melloni GEM**, Mazzarella L, Russo A, Bodini M, Bernard L, Luzi L, Pelicci PG and Riva L, A knowledge based computational framework for breast cancer predisposing gene discovery using exome sequencing data *Breast Cancer Research* 2017 19:63 DOI: 10.1186/s13058-017-0854-1
+**Melloni GEM**, Mazzarella L, Russo A, Bodini M, Bernard L, Luzi L, Pelicci PG and Riva L, A knowledge based computational framework for breast cancer predisposing gene discovery using exome sequencing data *Breast Cancer Research* 2017 19:63 doi: 10.1186/s13058-017-0854-1
 
 Ronchini C, Brozzi A, Riva L, Luzi L, Gruszka A, Scanziani E, **Melloni GE**, Dharmalingam G, Mutarelli M, Belcastro V, Lavorgna S, Rossi V, Spinelli O, Biondi A, Rambaldi A, Lo-Coco F, di Bernardo D, Pelicci PG. PML-RARA—associated cooperating mutations belong to a transcriptional network that is deregulated in myeloid leukemias *Leukemia*. 2016 Dec 27. doi: 10.1038/leu.2016.386
 
-Daniela Bossi, Angelo Cicalese, Gaetano I. Dellino, Lucilla Luzi, Laura Riva, Carolina D'Alesio, Giuseppe R. Diaferia, Alessandro Carugo, Elena Cavallaro, Rossana Piccioni, Massimo Barberis, Giovanni Mazzarol, Alessandro Testori, Simona Punzi, Isabella Pallavicini, Giulio Tosti, Luciano Giacó, **Giorgio Melloni**, Timothy P. Heffernan, Gioacchino Natoli, Giulio F. Draetta, Saverio Minucci, PierGiuseppe Pelicci and Luisa Lanfrancone In Vivo Genetic Screens of Patient-Derived Tumors Revealed Unexpected Frailty of the Transformed Phenotype *Cancer Discov* May 13, 2016; doi:10.1158/2159-8290.CD-15-1200
+Daniela Bossi, Angelo Cicalese, Gaetano I. Dellino, Lucilla Luzi, Laura Riva, Carolina D'Alesio, Giuseppe R. Diaferia, Alessandro Carugo, Elena Cavallaro, Rossana Piccioni, Massimo Barberis, Giovanni Mazzarol, Alessandro Testori, Simona Punzi, Isabella Pallavicini, Giulio Tosti, Luciano Giacó, **Giorgio Melloni**, Timothy P. Heffernan, Gioacchino Natoli, Giulio F. Draetta, Saverio Minucci, PierGiuseppe Pelicci and Luisa Lanfrancone In Vivo Genetic Screens of Patient-Derived Tumors Revealed Unexpected Frailty of the Transformed Phenotype *Cancer Discov* May 13, 2016; 
+doi: 10.1158/2159-8290.CD-15-1200
 
-**Melloni GE**, de Pretis S*, Riva L, Pelizzola M, Céol A, Costanza J, Müller H, Zammataro L LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer. *BMC Bioinformatics*. 2016 Feb 9;17(1):80. doi: 10.1186/s12859-016-0935-7.
+**Melloni GE**, de Pretis S, Riva L, Pelizzola M, Céol A, Costanza J, Müller H, Zammataro L LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer. *BMC Bioinformatics*. 2016 Feb 9;17(1):80. doi: 10.1186/s12859-016-0935-7.
 
 de Pretis S, Kress T, Morelli MJ, **Melloni GE,** Riva L, Amati B, Pelizzola M. INSPEcT: a Computational Tool to Infer mRNA Synthesis, Processing and Degradation Dynamics from RNA- and 4sU-seq Time Course Experiments , *Bioinformatics* (2015) doi:10.1093/bioinformatics/btv288
 
-Bodini M, Ronchini C, Giacò L, Russo A, **Melloni GEM**, Luzi L, Sardella D, Volorio S, Hasan SK, Ottone T, Lavorgna S, Lo-Coco F, Candoni A, Fanin R, Toffoletti E, Iacobucci I, Martinelli G, Cignetti A, Tarella C, Bernard L, Pelicci PG, and Riva L. The hidden genomic landscape of acute myeloid leukemia: subclonal structure revealed by undetected mutations. *Blood*. 2015 Jan 22;125(4):600-5. DOI 10.1182/blood-2014-05-576157
+Bodini M, Ronchini C, Giacò L, Russo A, **Melloni GEM**, Luzi L, Sardella D, Volorio S, Hasan SK, Ottone T, Lavorgna S, Lo-Coco F, Candoni A, Fanin R, Toffoletti E, Iacobucci I, Martinelli G, Cignetti A, Tarella C, Bernard L, Pelicci PG, and Riva L. The hidden genomic landscape of acute myeloid leukemia: subclonal structure revealed by undetected mutations. *Blood*. 2015 Jan 22;125(4):600-5. doi 10.1182/blood-2014-05-576157
 
-**Melloni GEM**, Ogier AGE, de Pretis S, Mazzarella L, Pelizzola M, Pelicci PG and Riva L. DOTS-Finder: a comprehensive tool for assessing driver genes in cancer genomes. *Genome Medicine* 2014, 6:44, DOI: 10.1186/gm563
+**Melloni GEM**, Ogier AGE, de Pretis S, Mazzarella L, Pelizzola M, Pelicci PG and Riva L. DOTS-Finder: a comprehensive tool for assessing driver genes in cancer genomes. *Genome Medicine* 2014, 6:44, doi: 10.1186/gm563
 
 Riva L, Ronchini C, Bodini M, Lo-Coco F, Lavorgna S, Ottone T, Martinelli G, Iacobucci I, Tarella C, Cignetti A, Volorio S, Bernard L, Russo A, **Melloni GEM**, Luzi L, Alcalay M, Dellino GI, Pelicci PG. Acute promyelocytic leukemias share cooperative mutations with other myeloid-leukemia subgroups. *Blood Cancer J.* 2013 Sep 13;3:e147. doi: 10.1038/bcj.2013.46.
 
 # On the run
 
 **Melloni GEM**, Guida A, Curigliano G, Botteri E, Esposito A, Kamal M, Le Torneau C, Riva L, Pelicci PG and Mazzarella L. Precision Trial Designer (PTD): a bioinformatic tool to aid in the design of genetic biomarker-driven clinical trials (in preparation)
 
-Arthur Gilly, Karoline Kuchenbaecker, Lorraine Southam, Daniel Suveges, Rachel Moore, **Giorgio E.M. Melloni**, Konstantinos Hatzikotoulas, Aliki-Eleni Farmaki, Graham Ritchie, Jeremy Schwartzentruber, Petr Danecek, Britt Kilian, Martin Pollard, Xiangyu Ge, Heather Elding, William Astle, Tao Jiang, Adam Butterworth, Nicole Soranzo, Emmanouil Tsafantakis, Maria Karaleftheri, George Dedoussis, Eleftheria Zeggini. Very low depth whole genome sequencing in complex trait association studies (submitted and available here http://www.biorxiv.org/content/early/2017/07/28/169789)
+Arthur Gilly, Karoline Kuchenbaecker, Lorraine Southam, Daniel Suveges, Rachel Moore, **Giorgio E.M. Melloni**, Konstantinos Hatzikotoulas, Aliki-Eleni Farmaki, Graham Ritchie, Jeremy Schwartzentruber, Petr Danecek, Britt Kilian, Martin Pollard, Xiangyu Ge, Heather Elding, William Astle, Tao Jiang, Adam Butterworth, Nicole Soranzo, Emmanouil Tsafantakis, Maria Karaleftheri, George Dedoussis, Eleftheria Zeggini. Very low depth whole genome sequencing in complex trait association studies ( submitted and available here [](http://www.biorxiv.org/content/early/2017/07/28/169789) )
 
 Dellino G, Palluzzi F, Piccioni R, Furia L, **Melloni GEM**, Guido D, Giacò L, Luzi L, Cittaro D, Faretta M, Crosetto N and Pelicci PG. Unresolved Double Strand Breaks in normal mammary cells are enriched at specific promoter regions and overlap with breakpoints of breast-cancer associated translocations (submitted)