Merge branch 'dev'

* dev: ENH: added spatio-temporal atlas (Gholipour et al., 2017) STYLE: Print NiftyMIC version to stdout at execution time
gift-surg · Feb 6, 2019 · 05abb39 · 05abb39
2 parents 9a9d887 + 6fdcc22
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diff --git a/.gitignore b/.gitignore
@@ -1,7 +1,6 @@
 build/
 html/
 latex/
-data/templates/
 data/tests/
 dist/
 *.nii

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
@@ -8,7 +8,6 @@ variables:
     ITK_DIR: /mnt/shared/mebner/environment/ITK/ITK_NiftyMIC-python${PY_VERSION}-build
     FSL_DIR: /mnt/shared/mebner/environment/FSL/fsl
     TEST_DIR: /home/mebner/Development/NiftyMIC/data/tests
-    TEMPLATES_DIR: /home/mebner/Development/NiftyMIC/data/templates
     NIFTYREG_INSTALL: /mnt/shared/mebner/environment/NiftyReg/NiftyReg-master-install
     CONVERT3D_INSTALL: /mnt/shared/mebner/environment/Convert3D/c3d-git-install
 
@@ -60,9 +59,6 @@ before_script:
     # run installation
     - pip install -e .
 
-    # copy templates to NiftyMIC
-    - cp -r ${TEMPLATES_DIR} ${cwd_dir}/data/
-
     # replace TEST_DIR in niftymic/definitions.py file
     - sed -i -- 's:DIR_TEST = os.path.join(DIR_ROOT, "data", "tests"):DIR_TEST = "'"$TEST_DIR"'":g' niftymic/definitions.py
     - cat niftymic/definitions.py

diff --git a/README.md b/README.md
@@ -153,7 +153,11 @@ niftymic_register_image \
 --dir-input-mc dir-to-motion_correction \
 --output path-to-registration-transform.txt \
 ```
+For fetal brain template space alignment, a [spatio-temporal atlas][gholipour_atlas] is provided in [`data/templates`](data/templates). If you make use of it, please cite
 
+* Gholipour, A., Rollins, C. K., Velasco-Annis, C., Ouaalam, A., Akhondi-Asl, A., Afacan, O., Ortinau, C. M., Clancy, S., Limperopoulos, C., Yang, E., Estroff, J. A. & Warfield, S. K. (2017). A normative spatiotemporal MRI atlas of the fetal brain for automatic segmentation and analysis of early brain growth. Scientific Reports 7, 476.
+
+and abide by the license agreement as described in [`data/templates/LICENSE`](data/templates/LICENSE).
 
 ### SRR Methods for Motion Corrected (or Static) Data
 
@@ -270,3 +274,4 @@ Associated publications are
 [simplereg-dependencies]: https://github.com/gift-surg/SimpleReg/wikis/simplereg-dependencies
 [pysitk]: https://github.com/gift-surg/PySiTK
 [fetal_brain_seg]: https://github.com/gift-surg/fetal_brain_seg
+[gholipour_atlas]: https://www.nature.com/articles/s41598-017-00525-w
diff --git a/data/templates/LICENSE b/data/templates/LICENSE
@@ -0,0 +1 @@
+CRL (Computational Radiology Laboratory) hereby grants a license to use, including the right to share, copy, distribute, and transmit, the information, images and data that appears on this webpage solely for non-commercial educational and research purposes, subject to the following restrictions: (1) You must at all times acknowledge and attribute ownership of the information, images and data to CRL, including reproducing CRL's copyright to the extent that the same appears thereon; for publications referencing the fetal structural atlas, cite Gholipour et al., Scientific Reports, 2017; for publications referencing the DTI atlas, cite Khan et al., NeuroImage, 2018 and Khan et al., MICCAI, 2018 (full citations found on the Fetal Brain Atlas webpage); and (2) You may not post the information, images and data on any website, electronic bulletin board or any other electronic medium without the express written permission of CRL or required acknowledgements. As the information, images and data is experimental in nature and is being provided solely to facilitate academic and scientific research, you agree that you will use this information, images and data at your own risk and without liability of any kind to CRL. CRL MAKES NO REPRESENTATIONS AND EXTENDS NO WARRANTIES OF ANY KIND, EITHER EXPRESSED OR IMPLIED WITH RESPECT TO THE INFORMATION, IMAGES AND DATA, AND THERE ARE NO EXPRESS OR IMPLIED WARRANTIES OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. Use of the information, images or data for any commercial purposes is strictly prohibited without the express written consent of CRL. By requesting access through submitting this form, you acknowledge that you understand and accept all the terms and conditions in this license agreement.
diff --git a/data/templates/README b/data/templates/README
@@ -0,0 +1,115 @@
+2016 Fetal Brain Atlas
+Copyright 2016, Computational Radiology Lab, Boston Childrens Hospital
+
+Contact:
+Ali Gholipour: [email protected]
+Clemente Velasco-Annis: [email protected]
+
+This version of the Spatio-Temporal Atlas (STA) was last edited on 11/21/16
+
+This spatio-temporal atlas and the included parcellations are not intended for medical use and have no warranty. Structures received varying amounts of attention and refinement based on the research goals at the time of creation and thus no guarantees can be made regarding the accuracy or precision of the segmentations, nor the withholding to any particular labeling convention or protocol between structures. Any output derived from the use of these atlases or parcellations shouled be checked in order to validate the accuracy of the results.
+
+# # # # # # # # # # # # # # # # # # # # # #
+New to this update (11/21/16) "Olympic edition":
+
+CHANGES TO LABELING SCHEME:
+	The parcellation scheme (label numbers) has been reorganized
+		All atlas images now share the same label key
+		The full key can be found below
+	Left and right white matter have been separated into separate labels
+	Labels for left and right internal capsule have been added to all images
+
+REFINEMENT TO PARCELLATIONS:
+	"Miscellanous_brain_tissue" has been mostly removed as most of the label was internal capsule
+	Developing white matter zones (SP, IZ & VZ) have been removed from STA31-33 because they were not felt to be accurate (differentiation between layers was arbitrary)
+		*There are two versions of the STA30 parcellation, one with developing white matter zones, one without*
+	Cortical plate was reduced in the region anterior to the corpus callosum (reduced the portion "wrapping" into hemisphere)
+	Subplate has been expanded to the appropriate width as per reviewer feedback
+	The intermediate zone/ventricular zone has been edited to shrink the ventricular zone in line with reviewer feedback
+	Deep gray matter structures have been edited to increase segmentation consistency between gestational ages
+
+# # # # # # # # # # # # # # # # # # # # # #
+# # # # # # # # # # # # # # # # # # # # # #
+New to this update (06/07/16):
+
+	White and gray cerebellum have been recombined because we could not ensure the accuracy of the delineation (very little refinement had been done since initial propagation of the parcellation scheme to this atlas).
+
+	The files have been renamed slightly.
+
+# # # # # # # # # # # # # # # # # # # # # #
+# # # # # # # # # # # # # # # # # # # # # #
+New to this update (03/30/16):
+
+ADDED TEMPLATES:
+	There are now atlas images and labels for gestational age (GA) weeks 21-37.
+
+DEVELOPING WHITE MATTER ZONES:
+	Labels for developing white matter zones have been added for GA 21-33
+	This includes left and right "ventricular zone", "intermediate zone" (similar to subventricular zone), and "subplate"
+	In these images, label 51 is now "miscellaneous brain tissue", mostly deep gray matter found between the larger subcortical structures
+	Images with the labeling convention are marked with "wmz"; for example, STA27_WMZparc.nii.gz
+
+	There are two versions of labels for STA31, STA32, and STA33
+	STA31_parc.nii.gz = All white matter is label 51
+	STA31_WMZparc.nii.gz = Developing white matter layers have been separated into miscellaneous brain tissue (#51), subplate (#73,74), intermediate zone (#75,76), and ventricular zone (#77,78)
+
+	Note: As the white matter homogenizes in composition during development, the visual differentiation between the layers also decreases. Because of this the accuracy of the developmental layers may not be great for the older brains (i.e. STA30-33). This primarily pertains to the border between intermediate zone and subplate.
+
+ADDITIONAL ADDED LABELS:
+	#5: Hippocampal commisure
+	#6: Fornix
+
+LABEL REFINEMENTS:
+	Many of the labels have been refined to increase accuracy, in particular:
+		hippocampus
+		caudate
+		thalamus
+		lentiform
+		corpus callosum
+		cortical plate
+# # # # # # # # # # # # # # # # # # # # # # 
+
+Label key (all images):
+
+   37 Hippocampus_L
+   38 Hippocampus_R
+   41 Amygdala_L
+   42 Amygdala_R
+   71 Caudate_L
+   72 Caudate_R
+   73 Lentiform_L
+   74 Lentiform_R
+   77 Thalamus_L
+   78 Thalamus_R
+   91 CorpusCallosum
+   92 Lateral_Ventricle_L
+   93 Lateral_Ventricle_R
+   94 Brainstem
+  100 Cerebellum_L
+  101 Cerebellum_R
+  108 Subthalamic_Nuc_L
+  109 Subthalamic_Nuc_R
+  110 Hippocampal_Comm
+  111 Fornix
+  112 Cortical_Plate_L
+  113 Cortical_Plate_R
+  114 Subplate_L
+  115 Subplate_R
+  116 Inter_Zone_L
+  117 Inter_Zone_R
+  118 Vent_Zone_L
+  119 Vent_Zone_R
+  120 White_Matter_L
+  121 White_Matter_R
+  122 Internal_Capsule_L
+  123 Internal_Capsule_R
+  124 CSF
+  125 Misc
+
+# # # # # # # # # # # # # # # # # # # # # # 
+
+Michael Ebner, Feb 16, 2018:
+- All image headers have been updated using fslreorient2std using `for i in *.nii.gz; do echo $i; fslreorient2std $i $i; done`
+- _mask: binarized image labels
+- _mask_dil: dilated binary masks; applied to SRR it approximates brain tissue only
+- templates_info.json: Additional information on templates like volume
diff --git a/data/templates/STA21.nii.gz b/data/templates/STA21.nii.gz
diff --git a/data/templates/STA21_WMZparc.nii.gz b/data/templates/STA21_WMZparc.nii.gz
diff --git a/data/templates/STA21_mask.nii.gz b/data/templates/STA21_mask.nii.gz
diff --git a/data/templates/STA21_mask_dil.nii.gz b/data/templates/STA21_mask_dil.nii.gz
diff --git a/data/templates/STA22.nii.gz b/data/templates/STA22.nii.gz
diff --git a/data/templates/STA22_WMZparc.nii.gz b/data/templates/STA22_WMZparc.nii.gz
diff --git a/data/templates/STA22_mask.nii.gz b/data/templates/STA22_mask.nii.gz
diff --git a/data/templates/STA22_mask_dil.nii.gz b/data/templates/STA22_mask_dil.nii.gz
diff --git a/data/templates/STA23.nii.gz b/data/templates/STA23.nii.gz
diff --git a/data/templates/STA23_WMZparc.nii.gz b/data/templates/STA23_WMZparc.nii.gz
diff --git a/data/templates/STA23_mask.nii.gz b/data/templates/STA23_mask.nii.gz
diff --git a/data/templates/STA23_mask_dil.nii.gz b/data/templates/STA23_mask_dil.nii.gz
diff --git a/data/templates/STA24.nii.gz b/data/templates/STA24.nii.gz
diff --git a/data/templates/STA24_WMZparc.nii.gz b/data/templates/STA24_WMZparc.nii.gz
diff --git a/data/templates/STA24_mask.nii.gz b/data/templates/STA24_mask.nii.gz
diff --git a/data/templates/STA24_mask_dil.nii.gz b/data/templates/STA24_mask_dil.nii.gz
diff --git a/data/templates/STA25.nii.gz b/data/templates/STA25.nii.gz
diff --git a/data/templates/STA25_WMZparc.nii.gz b/data/templates/STA25_WMZparc.nii.gz
diff --git a/data/templates/STA25_mask.nii.gz b/data/templates/STA25_mask.nii.gz
diff --git a/data/templates/STA25_mask_dil.nii.gz b/data/templates/STA25_mask_dil.nii.gz
diff --git a/data/templates/STA26.nii.gz b/data/templates/STA26.nii.gz
diff --git a/data/templates/STA26_WMZparc.nii.gz b/data/templates/STA26_WMZparc.nii.gz
diff --git a/data/templates/STA26_mask.nii.gz b/data/templates/STA26_mask.nii.gz
diff --git a/data/templates/STA26_mask_dil.nii.gz b/data/templates/STA26_mask_dil.nii.gz
diff --git a/data/templates/STA27.nii.gz b/data/templates/STA27.nii.gz
diff --git a/data/templates/STA27_WMZparc.nii.gz b/data/templates/STA27_WMZparc.nii.gz
diff --git a/data/templates/STA27_mask.nii.gz b/data/templates/STA27_mask.nii.gz
diff --git a/data/templates/STA27_mask_dil.nii.gz b/data/templates/STA27_mask_dil.nii.gz
diff --git a/data/templates/STA28.nii.gz b/data/templates/STA28.nii.gz
diff --git a/data/templates/STA28_WMZparc.nii.gz b/data/templates/STA28_WMZparc.nii.gz
diff --git a/data/templates/STA28_mask.nii.gz b/data/templates/STA28_mask.nii.gz
diff --git a/data/templates/STA28_mask_dil.nii.gz b/data/templates/STA28_mask_dil.nii.gz
diff --git a/data/templates/STA29.nii.gz b/data/templates/STA29.nii.gz
diff --git a/data/templates/STA29_WMZparc.nii.gz b/data/templates/STA29_WMZparc.nii.gz
diff --git a/data/templates/STA29_mask.nii.gz b/data/templates/STA29_mask.nii.gz
diff --git a/data/templates/STA29_mask_dil.nii.gz b/data/templates/STA29_mask_dil.nii.gz
diff --git a/data/templates/STA30.nii.gz b/data/templates/STA30.nii.gz
diff --git a/data/templates/STA30_WMZparc.nii.gz b/data/templates/STA30_WMZparc.nii.gz
diff --git a/data/templates/STA30_mask.nii.gz b/data/templates/STA30_mask.nii.gz
diff --git a/data/templates/STA30_mask_dil.nii.gz b/data/templates/STA30_mask_dil.nii.gz
diff --git a/data/templates/STA30_parc.nii.gz b/data/templates/STA30_parc.nii.gz
diff --git a/data/templates/STA31.nii.gz b/data/templates/STA31.nii.gz
diff --git a/data/templates/STA31_mask.nii.gz b/data/templates/STA31_mask.nii.gz
diff --git a/data/templates/STA31_mask_dil.nii.gz b/data/templates/STA31_mask_dil.nii.gz
diff --git a/data/templates/STA31_parc.nii.gz b/data/templates/STA31_parc.nii.gz
diff --git a/data/templates/STA32.nii.gz b/data/templates/STA32.nii.gz
diff --git a/data/templates/STA32_mask.nii.gz b/data/templates/STA32_mask.nii.gz
diff --git a/data/templates/STA32_mask_dil.nii.gz b/data/templates/STA32_mask_dil.nii.gz
diff --git a/data/templates/STA32_parc.nii.gz b/data/templates/STA32_parc.nii.gz
diff --git a/data/templates/STA33.nii.gz b/data/templates/STA33.nii.gz
diff --git a/data/templates/STA33_mask.nii.gz b/data/templates/STA33_mask.nii.gz
diff --git a/data/templates/STA33_mask_dil.nii.gz b/data/templates/STA33_mask_dil.nii.gz
diff --git a/data/templates/STA33_parc.nii.gz b/data/templates/STA33_parc.nii.gz
diff --git a/data/templates/STA34.nii.gz b/data/templates/STA34.nii.gz
diff --git a/data/templates/STA34_mask.nii.gz b/data/templates/STA34_mask.nii.gz
diff --git a/data/templates/STA34_mask_dil.nii.gz b/data/templates/STA34_mask_dil.nii.gz
diff --git a/data/templates/STA34_parc.nii.gz b/data/templates/STA34_parc.nii.gz
diff --git a/data/templates/STA35.nii.gz b/data/templates/STA35.nii.gz
diff --git a/data/templates/STA35_mask.nii.gz b/data/templates/STA35_mask.nii.gz
diff --git a/data/templates/STA35_mask_dil.nii.gz b/data/templates/STA35_mask_dil.nii.gz
diff --git a/data/templates/STA35_parc.nii.gz b/data/templates/STA35_parc.nii.gz
diff --git a/data/templates/STA36.nii.gz b/data/templates/STA36.nii.gz
diff --git a/data/templates/STA36_mask.nii.gz b/data/templates/STA36_mask.nii.gz
diff --git a/data/templates/STA36_mask_dil.nii.gz b/data/templates/STA36_mask_dil.nii.gz
diff --git a/data/templates/STA36_parc.nii.gz b/data/templates/STA36_parc.nii.gz
diff --git a/data/templates/STA37.nii.gz b/data/templates/STA37.nii.gz
diff --git a/data/templates/STA37_mask.nii.gz b/data/templates/STA37_mask.nii.gz
diff --git a/data/templates/STA37_mask_dil.nii.gz b/data/templates/STA37_mask_dil.nii.gz
diff --git a/data/templates/STA37_parc.nii.gz b/data/templates/STA37_parc.nii.gz
diff --git a/data/templates/templates_info.json b/data/templates/templates_info.json
@@ -0,0 +1,121 @@
+{
+    "21": {
+        "image": "STA21.nii.gz", 
+        "mask": "STA21_mask.nii.gz", 
+        "mask_dil": "STA21_mask_dil.nii.gz", 
+        "volume_mask": 89246.38487071976, 
+        "volume_mask_dil": 120038.46124333153
+    }, 
+    "22": {
+        "image": "STA22.nii.gz", 
+        "mask": "STA22_mask.nii.gz", 
+        "mask_dil": "STA22_mask_dil.nii.gz", 
+        "volume_mask": 101490.30689354343, 
+        "volume_mask_dil": 134909.44540126887
+    }, 
+    "23": {
+        "image": "STA23.nii.gz", 
+        "mask": "STA23_mask.nii.gz", 
+        "mask_dil": "STA23_mask_dil.nii.gz", 
+        "volume_mask": 106235.50507484014, 
+        "volume_mask_dil": 140715.503598928
+    }, 
+    "24": {
+        "image": "STA24.nii.gz", 
+        "mask": "STA24_mask.nii.gz", 
+        "mask_dil": "STA24_mask_dil.nii.gz", 
+        "volume_mask": 130878.99653601555, 
+        "volume_mask_dil": 170357.1202916332
+    }, 
+    "25": {
+        "image": "STA25.nii.gz", 
+        "mask": "STA25_mask.nii.gz", 
+        "mask_dil": "STA25_mask_dil.nii.gz", 
+        "volume_mask": 178492.25774336213, 
+        "volume_mask_dil": 227175.59493246424
+    }, 
+    "26": {
+        "image": "STA26.nii.gz", 
+        "mask": "STA26_mask.nii.gz", 
+        "mask_dil": "STA26_mask_dil.nii.gz", 
+        "volume_mask": 201635.08283969283, 
+        "volume_mask_dil": 253806.15093200956
+    }, 
+    "27": {
+        "image": "STA27.nii.gz", 
+        "mask": "STA27_mask.nii.gz", 
+        "mask_dil": "STA27_mask_dil.nii.gz", 
+        "volume_mask": 210435.81779203523, 
+        "volume_mask_dil": 263941.1528740433
+    }, 
+    "28": {
+        "image": "STA28.nii.gz", 
+        "mask": "STA28_mask.nii.gz", 
+        "mask_dil": "STA28_mask_dil.nii.gz", 
+        "volume_mask": 233175.18840337868, 
+        "volume_mask_dil": 290329.5337829808
+    }, 
+    "29": {
+        "image": "STA29.nii.gz", 
+        "mask": "STA29_mask.nii.gz", 
+        "mask_dil": "STA29_mask_dil.nii.gz", 
+        "volume_mask": 257051.194746539, 
+        "volume_mask_dil": 317684.56706204003
+    }, 
+    "30": {
+        "image": "STA30.nii.gz", 
+        "mask": "STA30_mask.nii.gz", 
+        "mask_dil": "STA30_mask_dil.nii.gz", 
+        "volume_mask": 282285.5319890282, 
+        "volume_mask_dil": 346364.6513653975
+    }, 
+    "31": {
+        "image": "STA31.nii.gz", 
+        "mask": "STA31_mask.nii.gz", 
+        "mask_dil": "STA31_mask_dil.nii.gz", 
+        "volume_mask": 312587.62620157294, 
+        "volume_mask_dil": 380993.6413300073
+    }, 
+    "32": {
+        "image": "STA32.nii.gz", 
+        "mask": "STA32_mask.nii.gz", 
+        "mask_dil": "STA32_mask_dil.nii.gz", 
+        "volume_mask": 340744.4484698328, 
+        "volume_mask_dil": 413634.54276009236
+    }, 
+    "33": {
+        "image": "STA33.nii.gz", 
+        "mask": "STA33_mask.nii.gz", 
+        "mask_dil": "STA33_mask_dil.nii.gz", 
+        "volume_mask": 356126.40670901025, 
+        "volume_mask_dil": 430765.4864316511
+    }, 
+    "34": {
+        "image": "STA34.nii.gz", 
+        "mask": "STA34_mask.nii.gz", 
+        "mask_dil": "STA34_mask_dil.nii.gz", 
+        "volume_mask": 392819.77292167663, 
+        "volume_mask_dil": 472869.6483262277
+    }, 
+    "35": {
+        "image": "STA35.nii.gz", 
+        "mask": "STA35_mask.nii.gz", 
+        "mask_dil": "STA35_mask_dil.nii.gz", 
+        "volume_mask": 418491.86852033855, 
+        "volume_mask_dil": 502023.33085117553
+    }, 
+    "36": {
+        "image": "STA36.nii.gz", 
+        "mask": "STA36_mask.nii.gz", 
+        "mask_dil": "STA36_mask_dil.nii.gz", 
+        "volume_mask": 422497.7414778769, 
+        "volume_mask_dil": 506874.512634493
+    }, 
+    "37": {
+        "image": "STA37.nii.gz", 
+        "mask": "STA37_mask.nii.gz", 
+        "mask_dil": "STA37_mask_dil.nii.gz", 
+        "volume_mask": 390531.14151572104, 
+        "volume_mask_dil": 470833.9439705052
+    }
+}
diff --git a/niftymic/__about__.py b/niftymic/__about__.py
@@ -1,7 +1,7 @@
 __author__ = "Michael Ebner"
 __email__ = "[email protected]"
 __license__ = "BSD-3-Clause"
-__version__ = "0.5.2"
+__version__ = "0.6"
 __summary__ = "NiftyMIC is a research-focused toolkit for " \
     "motion-correction and volumetric image reconstruction of " \
     "2D ultra-fast MRI."
diff --git a/niftymic/application/run_reconstruction_pipeline.py b/niftymic/application/run_reconstruction_pipeline.py
@@ -294,8 +294,8 @@ def main():
             ph.execute_command(cmd)
 
         # Copy SRR to output directory
-        output = "%sSRR_Stacks%d_GW%d.nii.gz" % (
-            args.prefix_output, len(args.filenames), gestational_age)
+        output = "%sSRR_Stacks%d.nii.gz" % (
+            args.prefix_output, len(args.filenames))
         path_to_output = os.path.join(args.dir_output, output)
         cmd = "cp -p %s %s" % (srr_template, path_to_output)
         exit_code = ph.execute_command(cmd)

diff --git a/niftymic/utilities/input_arparser.py b/niftymic/utilities/input_arparser.py
@@ -76,7 +76,7 @@ def parse_args(self):
 
         return self._parser.parse_args()
 
-    def print_arguments(self, args, title="Input Parameters:"):
+    def print_arguments(self, args, title="Configuration:"):
         ph.print_title(title)
         for arg in sorted(vars(args)):
             ph.print_info("%s: " % (arg), newline=False)
@@ -92,6 +92,7 @@ def print_arguments(self, args, title="Input Parameters:"):
                     print("\t%s" % val)
             else:
                 print(vals)
+        print("\nNiftyMIC version: %s" % niftymic.__version__)
         ph.print_line_separator(add_newline=False)
         print("")
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		CRL (Computational Radiology Laboratory) hereby grants a license to use, including the right to share, copy, distribute, and transmit, the information, images and data that appears on this webpage solely for non-commercial educational and research purposes, subject to the following restrictions: (1) You must at all times acknowledge and attribute ownership of the information, images and data to CRL, including reproducing CRL's copyright to the extent that the same appears thereon; for publications referencing the fetal structural atlas, cite Gholipour et al., Scientific Reports, 2017; for publications referencing the DTI atlas, cite Khan et al., NeuroImage, 2018 and Khan et al., MICCAI, 2018 (full citations found on the Fetal Brain Atlas webpage); and (2) You may not post the information, images and data on any website, electronic bulletin board or any other electronic medium without the express written permission of CRL or required acknowledgements. As the information, images and data is experimental in nature and is being provided solely to facilitate academic and scientific research, you agree that you will use this information, images and data at your own risk and without liability of any kind to CRL. CRL MAKES NO REPRESENTATIONS AND EXTENDS NO WARRANTIES OF ANY KIND, EITHER EXPRESSED OR IMPLIED WITH RESPECT TO THE INFORMATION, IMAGES AND DATA, AND THERE ARE NO EXPRESS OR IMPLIED WARRANTIES OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. Use of the information, images or data for any commercial purposes is strictly prohibited without the express written consent of CRL. By requesting access through submitting this form, you acknowledge that you understand and accept all the terms and conditions in this license agreement.