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Output format #198

Merged
merged 3 commits into from
Aug 9, 2022
Merged

Output format #198

merged 3 commits into from
Aug 9, 2022

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ozguzMete
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A possible solution for the issue #194

There are lots of empty columns in the output file. You will be able to use option-format option to supply an output format.
As an example, you can create a file with the following line:

Hugo_Symbol,Entrez_Gene_Id,Center,NCBI_Build,Chromosome

the application will only output these columns + any other column/s required by the application.
Order is preserved.

Currently, it only supports commas as the separator. You can use any number of spaces you like...

@ozguzMete ozguzMete mentioned this pull request Jun 21, 2022
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@ozguzMete ozguzMete force-pushed the outputFormat branch 2 times, most recently from 5a337ed to 7acb42d Compare July 30, 2022 22:01
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@inodb inodb left a comment

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LGTM

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@rmadupuri rmadupuri left a comment

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Tested and looks good! Thanks!

@inodb
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inodb commented Aug 9, 2022

Follow up as reported by @rmadupuri : #210

@inodb inodb merged commit 67b8cbe into genome-nexus:master Aug 9, 2022
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3 participants