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Move all minerva content from owltools
* split minerva into multiple submodules * provide a command-line wrapper, which included all of owltools
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hdietze
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Jun 4, 2015
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| @@ -1,36 +1,5 @@ | ||
| <?xml version="1.0" encoding="UTF-8"?> | ||
| <classpath> | ||
| <classpathentry kind="src" output="target/classes" path="src/main/java"> | ||
| <attributes> | ||
| <attribute name="optional" value="true"/> | ||
| <attribute name="maven.pomderived" value="true"/> | ||
| </attributes> | ||
| </classpathentry> | ||
| <classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources"> | ||
| <attributes> | ||
| <attribute name="maven.pomderived" value="true"/> | ||
| </attributes> | ||
| </classpathentry> | ||
| <classpathentry kind="src" output="target/test-classes" path="src/test/java"> | ||
| <attributes> | ||
| <attribute name="optional" value="true"/> | ||
| <attribute name="maven.pomderived" value="true"/> | ||
| </attributes> | ||
| </classpathentry> | ||
| <classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources"> | ||
| <attributes> | ||
| <attribute name="maven.pomderived" value="true"/> | ||
| </attributes> | ||
| </classpathentry> | ||
| <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"> | ||
| <attributes> | ||
| <attribute name="maven.pomderived" value="true"/> | ||
| </attributes> | ||
| </classpathentry> | ||
| <classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER"> | ||
| <attributes> | ||
| <attribute name="maven.pomderived" value="true"/> | ||
| </attributes> | ||
| </classpathentry> | ||
| <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/> | ||
| <classpathentry kind="output" path="target/classes"/> | ||
| </classpath> |
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| target/ | ||
| /.DS_Store |
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| activeProfiles= | ||
| eclipse.preferences.version=1 | ||
| resolveWorkspaceProjects=true | ||
| version=1 |
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| @@ -0,0 +1,26 @@ | ||
| <?xml version="1.0" encoding="UTF-8"?> | ||
| <classpath> | ||
| <classpathentry kind="src" output="target/classes" path="src/main/java"> | ||
| <attributes> | ||
| <attribute name="optional" value="true"/> | ||
| <attribute name="maven.pomderived" value="true"/> | ||
| </attributes> | ||
| </classpathentry> | ||
| <classpathentry kind="src" output="target/test-classes" path="src/test/java"> | ||
| <attributes> | ||
| <attribute name="optional" value="true"/> | ||
| <attribute name="maven.pomderived" value="true"/> | ||
| </attributes> | ||
| </classpathentry> | ||
| <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"> | ||
| <attributes> | ||
| <attribute name="maven.pomderived" value="true"/> | ||
| </attributes> | ||
| </classpathentry> | ||
| <classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER"> | ||
| <attributes> | ||
| <attribute name="maven.pomderived" value="true"/> | ||
| </attributes> | ||
| </classpathentry> | ||
| <classpathentry kind="output" path="target/classes"/> | ||
| </classpath> |
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| @@ -0,0 +1 @@ | ||
| target/ |
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| <?xml version="1.0" encoding="UTF-8"?> | ||
| <projectDescription> | ||
| <name>minerva-cli</name> | ||
| <comment></comment> | ||
| <projects> | ||
| </projects> | ||
| <buildSpec> | ||
| <buildCommand> | ||
| <name>org.eclipse.jdt.core.javabuilder</name> | ||
| <arguments> | ||
| </arguments> | ||
| </buildCommand> | ||
| <buildCommand> | ||
| <name>org.eclipse.m2e.core.maven2Builder</name> | ||
| <arguments> | ||
| </arguments> | ||
| </buildCommand> | ||
| </buildSpec> | ||
| <natures> | ||
| <nature>org.eclipse.jdt.core.javanature</nature> | ||
| <nature>org.eclipse.m2e.core.maven2Nature</nature> | ||
| </natures> | ||
| </projectDescription> |
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| eclipse.preferences.version=1 | ||
| encoding//src/main/java=UTF-8 | ||
| encoding/<project>=UTF-8 |
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| eclipse.preferences.version=1 | ||
| org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7 | ||
| org.eclipse.jdt.core.compiler.compliance=1.7 | ||
| org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning | ||
| org.eclipse.jdt.core.compiler.source=1.7 |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,4 @@ | ||
| activeProfiles= | ||
| eclipse.preferences.version=1 | ||
| resolveWorkspaceProjects=true | ||
| version=1 |
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| <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | ||
| xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"> | ||
| <modelVersion>4.0.0</modelVersion> | ||
| <parent> | ||
| <artifactId>minerva</artifactId> | ||
| <groupId>org.geneontology</groupId> | ||
| <version>0.2.2-SNAPSHOT</version> | ||
| </parent> | ||
| <artifactId>minerva-cli</artifactId> | ||
| <name>Minerva-CommandLineInterface</name> | ||
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| <dependencies> | ||
| <dependency> | ||
| <groupId>org.geneontology</groupId> | ||
| <artifactId>minerva-converter</artifactId> | ||
| <version>${project.parent.version}</version> | ||
| </dependency> | ||
| <dependency> | ||
| <groupId>org.bbop</groupId> | ||
| <artifactId>OWLTools-Runner</artifactId> | ||
| </dependency> | ||
| </dependencies> | ||
|
|
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| </project> |
11 changes: 11 additions & 0 deletions
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minerva-cli/src/main/java/org/geneontology/minerva/cli/CommandLineInterface.java
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| package org.geneontology.minerva.cli; | ||
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| public class CommandLineInterface { | ||
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| public static void main(String[] args) throws Exception { | ||
| MinervaCommandRunner cr = new MinervaCommandRunner(); | ||
| cr.run(args); | ||
| } | ||
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| } |
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