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Bump the all-dependencies group with 9 updates #31

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merged 1 commit into from
Nov 18, 2024

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Bumps the all-dependencies group with 9 updates:

Package From To
bioregistry 0.11.24 0.11.25
deprecated 1.2.14 1.2.15
google-api-core 2.22.0 2.23.0
google-api-python-client 2.151.0 2.153.0
googleapis-common-protos 1.65.0 1.66.0
pystow 0.5.6 0.6.0
setuptools 75.3.0 75.5.0
tomli 2.0.2 2.1.0
webcolors 24.8.0 24.11.1

Updates bioregistry from 0.11.24 to 0.11.25

Commits

Updates deprecated from 1.2.14 to 1.2.15

Release notes

Sourced from deprecated's releases.

v1.2.15

What's Changed

New Contributors

Full Changelog: laurent-laporte-pro/deprecated@v1.2.14...v1.2.15

Changelog

Sourced from deprecated's changelog.

v1.2.15 (2024-11-15)

Bug fix release

Fix

  • Resolve Python 2.7 support issue introduced in v1.2.14 in sphinx.py.

  • Fix #69: Add extra_stacklevel argument for interoperating with other wrapper functions (refer to #68 for a concrete use case).

  • Fix #73: Update class method deprecation warnings for Python 3.13.

  • Fix #75: Update GitHub workflows and fix development dependencies for Python 3.12.

Other

  • Fix #66: discontinue TravisCI and AppVeyor due to end of free support.
Commits
  • 7773ef0 v1.2.15 (#76)
  • e2f3c28 docs: replace "tantale" by "laurent-laporte-pro" in documentation and links
  • a3cb1c3 Prepare next version 1.2.15 (2024-11-15)
  • c9802b4 docs: change the author email in project metadata
  • d138376 build: fix configuration of bumpversion
  • aad0009 build: discontinue AppVeyor due to end of free support (related to #67)
  • cca21ac chore: update of the .gitignore file to comply with modern standards
  • 1fc5c34 docs: update change log for #75
  • abcb4e9 ci: update GitHub workflows and fix development dependencies for Python 3.12 ...
  • d87ab55 Don't test EOL Python 3.7 on macOS
  • Additional commits viewable in compare view

Updates google-api-core from 2.22.0 to 2.23.0

Release notes

Sourced from google-api-core's releases.

v2.23.0

2.23.0 (2024-11-11)

Features

v2.23.0rc0

2.23.0rc0 (2024-10-28)

Features

Changelog

Sourced from google-api-core's changelog.

2.23.0 (2024-11-11)

Features

Commits

Updates google-api-python-client from 2.151.0 to 2.153.0

Release notes

Sourced from google-api-python-client's releases.

v2.153.0

2.153.0 (2024-11-12)

Features

v2.152.0

2.152.0 (2024-11-07)

Features

... (truncated)

Commits

Updates googleapis-common-protos from 1.65.0 to 1.66.0

Release notes

Sourced from googleapis-common-protos's releases.

v1.66.0

1.66.0 (2024-11-12)

Features

  • Add MISSING_ORIGIN and OVERLOADED_CREDENTIALS to ErrorReason enum (d0478d8)
  • Add field protobuf_pythonic_types_enabled to ExperimentalFeatures message (d0478d8)
  • Add field selective_gapic_generation to CommonLanguageSettings message (d0478d8)
  • Add field time_series_resource_hierarchy_level to MetricDescriptorMetadata message (d0478d8)
  • Add message SelectiveGapicGeneration (d0478d8)
Changelog

Sourced from googleapis-common-protos's changelog.

1.66.0 (2024-11-12)

Features

  • Add MISSING_ORIGIN and OVERLOADED_CREDENTIALS to ErrorReason enum (d0478d8)
  • Add field protobuf_pythonic_types_enabled to ExperimentalFeatures message (d0478d8)
  • Add field selective_gapic_generation to CommonLanguageSettings message (d0478d8)
  • Add field time_series_resource_hierarchy_level to MetricDescriptorMetadata message (d0478d8)
  • Add message SelectiveGapicGeneration (d0478d8)
Commits

Updates pystow from 0.5.6 to 0.6.0

Release notes

Sourced from pystow's releases.

v0.6.0

Enhancements

Bug Fixes

Typing

Packaging

Full Changelog: cthoyt/pystow@v0.5.6...v0.6.0

Commits
  • dc493ce Bump version: 0.6.0-dev → 0.6.0
  • 906e7f9 Bump version: 0.5.7-dev → 0.6.0-dev
  • d8de308 Finish transitioning to cookiecutter-snekpack (#83)
  • c4217fb Update packaging, formatting, and linting (#82)
  • 99acae0 Add remaining type hints for extras (#81)
  • 7c37661 Improve typing in pystow.utils (#80)
  • 5be6357 Add initial support for version handling (#76)
  • fd7de90 Update impl.py
  • ac29ae4 Add additional detailed opener type annotations (#79)
  • 39dda18 More detailed typing on file openers (#78)
  • Additional commits viewable in compare view

Updates setuptools from 75.3.0 to 75.5.0

Changelog

Sourced from setuptools's changelog.

v75.5.0

Features

  • Removed support for SETUPTOOLS_DANGEROUSLY_SKIP_PYPROJECT_VALIDATION, as it is deemed prone to errors. (#4746)

v75.4.0

Features

  • Added support for the environment variable SETUPTOOLS_DANGEROUSLY_SKIP_PYPROJECT_VALIDATION=true, allowing users to bypass the validation of pyproject.toml. This option should be used only as a last resort when resolving dependency issues, as it may lead to improper functioning. Users who enable this setting are responsible for ensuring that pyproject.toml complies with setuptools requirements. (#4611)

    .. attention:: This environment variable was removed in a later version of setuptools.

  • Require Python 3.9 or later. (#4718)

  • Remove dependency on importlib_resources and the vendored copy of the library. Instead, setuptools consistently rely on stdlib's importlib.resources (available on Python 3.9+). (#4718)

  • Setuptools' bdist_wheel implementation no longer produces wheels with the m SOABI flag (pymalloc-related). This flag was removed on Python 3.8+ (see :obj:sys.abiflags). (#4718)

  • Updated vendored packaging version to 24.2. (#4740)

Bugfixes

Commits
  • 5400015 Bump version: 75.4.0 → 75.5.0
  • 01b9f20 Add note about removed variable in NEWS.rst
  • 57ed6f0 Revert "Allow user to skip validation of pyproject.toml via env var" (#4746)
  • 36e945e Add news fragment
  • f6c9fdb Revert "Allow user to skip validation of pyproject.toml via env var"
  • 8f5559c Bump version: 75.3.0 → 75.4.0
  • 6cc5f08 Update mypy requirement from ==1.12.* to >=1.12,<1.14 (#4700)
  • 748c851 Update mypy requirement from ==1.12.* to >=1.12,<1.14
  • c9d980f Refactor/unify/extract shutil.rmtree callbacks (and avoid repetition) (#4682)
  • db2b206 Extract test for shutil.rmtree callback to its own file
  • Additional commits viewable in compare view

Updates tomli from 2.0.2 to 2.1.0

Changelog

Sourced from tomli's changelog.

2.1.0

  • Deprecated
    • Instantiating TOMLDecodeError with free-form arguments. msg, doc and pos arguments should be given.
  • Added
    • msg, doc, pos, lineno and colno attributes to TOMLDecodeError
Commits
  • d6e045b Bump version: 2.0.2 → 2.1.0
  • d1d6a85 Add attributes to TOMLDecodeError. Deprecate free-form __init__ args (#238)
  • 59ed9ef Add a comment about implicit lru_cache bound
  • 9d25b3f Test against Python 3.13 final (#237)
  • f57fb66 Add test coverage for text mode error (#231)
  • 4be816b Convert tox config to native TOML
  • e2f8d2d Merge pull request #233 from hukkin/version-2.0.2
  • See full diff in compare view

Updates webcolors from 24.8.0 to 24.11.1

Changelog

Sourced from webcolors's changelog.

.. _changelog:

Changelog

This document lists the changes in each release of webcolors.

Version numbering

This library currently tracks its version numbers using the YY.MM.MICRO form of Calendar Versioning <https://calver.org>_ ("CalVer"), in which the first two components of the version number are the (two-digit) year and (non-zero-padded) month of the release date, while the third component is an incrementing value for releases occurring in that month. For example, the first release issued in January 2025 would have a version number of 25.1.0; a subsequent release in the same month would be 25.1.1; a release the following month (February) would be 25.2.0.

The CalVer system was adopted for this library in 2024, and the first release to use a CalVer version number was 24.6.0.

API stability and deprecations

The API stability/deprecation policy for this library is as follows:

  • The supported stable public API of this library is the set of symbols which are exported by its __all__ declaration and which are documented in this documentation. For classes exported there, the supported stable public API is the set of methods and attributes of those classes whose names do not begin with one or more underscore (_) characters and which are documented in this documentation.

  • When a public API is to be removed, or undergo a backwards-incompatible change, it will emit a deprecation warning which serves as notice of the intended removal or change, and which will give a date -- which will always be at least in the next calendar year after the first release which emits the deprecation warning -- past which the removal or change may occur without further warning.

  • Security fixes, and fixes for high-severity bugs (such as those which might cause unrecoverable crash or data loss), are not required to emit deprecation warnings, and may -- if needed -- impose backwards-incompatible change in any release. If this occurs, this changelog document will contain a note explaining why the usual deprecation process could not be followed for that case.

... (truncated)

Commits
  • 834f77b Release 24.11.1.
  • 8df5318 Release 24.11.0.
  • c55f147 Start prepping 24.11.0.
  • 396f2cc Try the coverage action with plain pip.
  • a3b9397 Adjust coverage configuration.
  • 690949b Explicitly specify Python version.
  • 8caf72d Switch back to the original version of the coverage action.
  • ef82dee Attempt to fix the coverage check.
  • f3cde3d Remove disallowed pip usage.
  • cc1d2a1 Adjust which jobs run in CI.
  • Additional commits viewable in compare view

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Bumps the all-dependencies group with 9 updates:

| Package | From | To |
| --- | --- | --- |
| [bioregistry](https://github.com/biopragmatics/bioregistry) | `0.11.24` | `0.11.25` |
| [deprecated](https://github.com/laurent-laporte-pro/deprecated) | `1.2.14` | `1.2.15` |
| [google-api-core](https://github.com/googleapis/python-api-core) | `2.22.0` | `2.23.0` |
| [google-api-python-client](https://github.com/googleapis/google-api-python-client) | `2.151.0` | `2.153.0` |
| [googleapis-common-protos](https://github.com/googleapis/python-api-common-protos) | `1.65.0` | `1.66.0` |
| [pystow](https://github.com/cthoyt/pystow) | `0.5.6` | `0.6.0` |
| [setuptools](https://github.com/pypa/setuptools) | `75.3.0` | `75.5.0` |
| [tomli](https://github.com/hukkin/tomli) | `2.0.2` | `2.1.0` |
| [webcolors](https://github.com/ubernostrum/webcolors) | `24.8.0` | `24.11.1` |


Updates `bioregistry` from 0.11.24 to 0.11.25
- [Release notes](https://github.com/biopragmatics/bioregistry/releases)
- [Commits](biopragmatics/bioregistry@v0.11.24...v0.11.25)

Updates `deprecated` from 1.2.14 to 1.2.15
- [Release notes](https://github.com/laurent-laporte-pro/deprecated/releases)
- [Changelog](https://github.com/laurent-laporte-pro/deprecated/blob/master/CHANGELOG.rst)
- [Commits](laurent-laporte-pro/deprecated@v1.2.14...v1.2.15)

Updates `google-api-core` from 2.22.0 to 2.23.0
- [Release notes](https://github.com/googleapis/python-api-core/releases)
- [Changelog](https://github.com/googleapis/python-api-core/blob/main/CHANGELOG.md)
- [Commits](googleapis/python-api-core@v2.22.0...v2.23.0)

Updates `google-api-python-client` from 2.151.0 to 2.153.0
- [Release notes](https://github.com/googleapis/google-api-python-client/releases)
- [Commits](googleapis/google-api-python-client@v2.151.0...v2.153.0)

Updates `googleapis-common-protos` from 1.65.0 to 1.66.0
- [Release notes](https://github.com/googleapis/python-api-common-protos/releases)
- [Changelog](https://github.com/googleapis/python-api-common-protos/blob/main/CHANGELOG.md)
- [Commits](googleapis/python-api-common-protos@v1.65.0...v1.66.0)

Updates `pystow` from 0.5.6 to 0.6.0
- [Release notes](https://github.com/cthoyt/pystow/releases)
- [Commits](cthoyt/pystow@v0.5.6...v0.6.0)

Updates `setuptools` from 75.3.0 to 75.5.0
- [Release notes](https://github.com/pypa/setuptools/releases)
- [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst)
- [Commits](pypa/setuptools@v75.3.0...v75.5.0)

Updates `tomli` from 2.0.2 to 2.1.0
- [Changelog](https://github.com/hukkin/tomli/blob/master/CHANGELOG.md)
- [Commits](hukkin/tomli@2.0.2...2.1.0)

Updates `webcolors` from 24.8.0 to 24.11.1
- [Changelog](https://github.com/ubernostrum/webcolors/blob/trunk/docs/changelog.rst)
- [Commits](ubernostrum/webcolors@24.8.0...24.11.1)

---
updated-dependencies:
- dependency-name: bioregistry
  dependency-type: indirect
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: deprecated
  dependency-type: indirect
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: google-api-core
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: google-api-python-client
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: googleapis-common-protos
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: pystow
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: setuptools
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: tomli
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: webcolors
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
...

Signed-off-by: dependabot[bot] <[email protected]>
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PR Preview Action v1.4.8
🚀 Deployed preview to https://geneontology.github.io/gocam-py/pr-preview/pr-31/
on branch gh-pages at 2024-11-18 02:33 UTC

@pkalita-lbl pkalita-lbl merged commit 9e6ac3c into main Nov 18, 2024
3 checks passed
@pkalita-lbl pkalita-lbl deleted the dependabot/pip/all-dependencies-667f7a20c7 branch November 18, 2024 16:32
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