Skip to content

Commit

Permalink
Updated serialized Models used in tests
Browse files Browse the repository at this point in the history
  • Loading branch information
@pkalita-lbl
pkalita-lbl committed Sep 19, 2024
1 parent 728ee58 commit 8188db9
Show file tree
Hide file tree
Showing 2 changed files with 156 additions and 11 deletions.
81 changes: 75 additions & 6 deletions tests/input/Model-63f809ec00000701.yaml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -7,170 +7,239 @@ status: production
activities:
- id: gomodel:63f809ec00000701/63f809ec00000742
enabled_by:
type: EnabledByGeneProductAssociation
evidence: []
provenances: []
term: UniProtKB:Q96Q11
molecular_function:
type: MolecularFunctionAssociation
evidence:
- term: ECO:0000314
reference: PMID:32075755
provenances:
- contributor: https://orcid.org/0000-0001-7299-6685
date: '2023-03-01'
provenances: []
term: GO:0004810
part_of:
type: BiologicalProcessAssociation
evidence:
- term: ECO:0000314
reference: PMID:32075755
provenances:
- contributor: https://orcid.org/0000-0001-7299-6685
date: '2023-03-01'
provenances: []
term: GO:0001680
has_input: []
has_output: []
causal_associations: []
provenances: []
- id: gomodel:63f809ec00000701/63f809ec00000726
enabled_by:
type: EnabledByGeneProductAssociation
evidence: []
provenances: []
term: UniProtKB:Q9H8Y5
molecular_function:
type: MolecularFunctionAssociation
evidence:
- term: ECO:0000314
reference: PMID:31011209
provenances:
- contributor: https://orcid.org/0000-0001-7299-6685
date: '2023-03-01'
provenances: []
term: GO:0004521
part_of:
type: BiologicalProcessAssociation
evidence:
- term: ECO:0000314
reference: PMID:31011209
provenances:
- contributor: https://orcid.org/0000-0001-7299-6685
date: '2023-03-01'
provenances: []
term: GO:0072344
has_input: []
has_output:
- evidence:
- type: MoleculeAssociation
evidence:
- term: ECO:0000314
reference: PMID:31011209
provenances:
- contributor: https://orcid.org/0000-0001-7299-6685
date: '2023-03-01'
provenances: []
term: CHEBI:10668
causal_associations:
- evidence:
- type: CausalAssociation
evidence:
- term: ECO:0000314
reference: PMID:31011209
provenances:
- contributor: https://orcid.org/0000-0001-7299-6685
date: '2023-03-01'
provenances: []
predicate: RO:0002629
downstream_activity: gomodel:63f809ec00000701/63f809ec00000735
provenances: []
- id: gomodel:63f809ec00000701/63f809ec00000735
enabled_by:
type: EnabledByGeneProductAssociation
evidence: []
provenances: []
term: UniProtKB:Q9H777
molecular_function:
type: MolecularFunctionAssociation
evidence:
- term: ECO:0000314
reference: PMID:32075755
provenances:
- contributor: https://orcid.org/0000-0001-7299-6685
date: '2023-03-01'
provenances: []
term: GO:0004549
part_of:
type: BiologicalProcessAssociation
evidence:
- term: ECO:0000314
reference: PMID:32075755
provenances:
- contributor: https://orcid.org/0000-0001-7299-6685
date: '2023-03-01'
provenances: []
term: GO:0042780
has_input:
- evidence:
- type: MoleculeAssociation
evidence:
- term: ECO:0000314
reference: PMID:32075755
provenances:
- contributor: https://orcid.org/0000-0001-7299-6685
date: '2023-03-01'
provenances: []
term: CHEBI:10668
has_output: []
causal_associations:
- evidence:
- type: CausalAssociation
evidence:
- term: ECO:0000314
reference: PMID:32075755
provenances:
- contributor: https://orcid.org/0000-0001-7299-6685
date: '2023-03-01'
provenances: []
predicate: RO:0002629
downstream_activity: gomodel:63f809ec00000701/63f809ec00000742
provenances: []
- id: gomodel:63f809ec00000701/63f809ec00000706
enabled_by:
type: EnabledByGeneProductAssociation
evidence: []
provenances: []
term: UniProtKB:O60524
molecular_function:
type: MolecularFunctionAssociation
evidence:
- term: ECO:0000314
reference: PMID:33909987
provenances:
- contributor: https://orcid.org/0000-0001-7299-6685
date: '2023-03-01'
provenances: []
term: GO:1904678
occurs_in:
type: CellularAnatomicalEntityAssociation
evidence:
- term: ECO:0000314
reference: PMID:33909987
provenances:
- contributor: https://orcid.org/0000-0001-7299-6685
date: '2023-03-01'
provenances: []
term: GO:0022626
part_of:
type: BiologicalProcessAssociation
evidence:
- term: ECO:0000314
reference: PMID:33909987
provenances:
- contributor: https://orcid.org/0000-0001-7299-6685
date: '2023-03-01'
provenances: []
term: GO:0140708
has_input:
- evidence:
- type: MoleculeAssociation
evidence:
- term: ECO:0000314
reference: PMID:33909987
provenances:
- contributor: https://orcid.org/0000-0001-7299-6685
date: '2023-03-01'
provenances: []
term: CHEBI:17732
has_output: []
causal_associations:
- evidence:
- type: CausalAssociation
evidence:
- term: ECO:0000314
reference: PMID:33909987
provenances:
- contributor: https://orcid.org/0000-0001-7299-6685
date: '2023-03-02'
provenances: []
predicate: RO:0002304
downstream_activity: gomodel:63f809ec00000701/63f809ec00000726
provenances: []
objects:
- id: GO:1904678
label: alpha-aminoacyl-tRNA binding
type: gocam:Object
- id: UniProtKB:O60524
label: NEMF Hsap
type: gocam:Object
- id: GO:0140708
label: CAT tailing
type: gocam:Object
- id: GO:0022626
label: cytosolic ribosome
type: gocam:Object
- id: CHEBI:17732
label: Ala-tRNA(Ala)
type: gocam:Object
- id: GO:0004521
label: RNA endonuclease activity
type: gocam:Object
- id: UniProtKB:Q9H8Y5
label: ANKZF1 Hsap
type: gocam:Object
- id: GO:0072344
label: rescue of stalled ribosome
type: gocam:Object
- id: ECO:0000314
label: direct assay evidence used in manual assertion
type: gocam:Object
- id: CHEBI:10668
label: tRNA precursor
type: gocam:Object
- id: GO:0004549
label: tRNA-specific ribonuclease activity
type: gocam:Object
- id: UniProtKB:Q9H777
label: ELAC1 Hsap
type: gocam:Object
- id: GO:0042780
label: tRNA 3'-end processing
type: gocam:Object
- id: GO:0004810
label: CCA tRNA nucleotidyltransferase activity
type: gocam:Object
- id: UniProtKB:Q96Q11
label: TRNT1 Hsap
type: gocam:Object
- id: GO:0001680
label: tRNA 3'-terminal CCA addition
type: gocam:Object
provenances: []

Loading

0 comments on commit 8188db9

Please sign in to comment.