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48 changes: 24 additions & 24 deletions evidence/index.html
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Expand Up @@ -338,63 +338,63 @@ <h2 id="applicable-classes">Applicable Classes</h2>
</thead>
<tbody>
<tr>
<td><a href="../EnabledByProteinComplexAssociation/">EnabledByProteinComplexAssociation</a></td>
<td>An association between an activity and a protein complex</td>
<td><a href="../EnabledByGeneProductAssociation/">EnabledByGeneProductAssociation</a></td>
<td>An association between an activity and a gene product</td>
<td>no</td>
</tr>
<tr>
<td><a href="../GrossAnatomyAssociation/">GrossAnatomyAssociation</a></td>
<td>An association between an activity and a gross anatomical structure term</td>
<td><a href="../Association/">Association</a></td>
<td>An abstract grouping for different kinds of evidence-associated provenance</td>
<td>no</td>
</tr>
<tr>
<td><a href="../TermAssociation/">TermAssociation</a></td>
<td>An association between an activity and a term, potentially with extensions</td>
<td><a href="../CellTypeAssociation/">CellTypeAssociation</a></td>
<td>An association between an activity and a cell type term</td>
<td>no</td>
</tr>
<tr>
<td><a href="../CellTypeAssociation/">CellTypeAssociation</a></td>
<td>An association between an activity and a cell type term</td>
<td><a href="../CellularAnatomicalEntityAssociation/">CellularAnatomicalEntityAssociation</a></td>
<td>An association between an activity and a cellular anatomical entity term</td>
<td>no</td>
</tr>
<tr>
<td><a href="../CausalAssociation/">CausalAssociation</a></td>
<td>A causal association between two activities</td>
<td><a href="../MoleculeAssociation/">MoleculeAssociation</a></td>
<td>An association between an activity and a molecule term</td>
<td>no</td>
</tr>
<tr>
<td><a href="../MolecularFunctionAssociation/">MolecularFunctionAssociation</a></td>
<td>An association between an activity and a molecular function term</td>
<td><a href="../BiologicalProcessAssociation/">BiologicalProcessAssociation</a></td>
<td>An association between an activity and a biological process term</td>
<td>no</td>
</tr>
<tr>
<td><a href="../EnabledByGeneProductAssociation/">EnabledByGeneProductAssociation</a></td>
<td>An association between an activity and a gene product</td>
<td><a href="../GrossAnatomyAssociation/">GrossAnatomyAssociation</a></td>
<td>An association between an activity and a gross anatomical structure term</td>
<td>no</td>
</tr>
<tr>
<td><a href="../EnabledByAssociation/">EnabledByAssociation</a></td>
<td>An association between an activity and the gene product or complex that carri...</td>
<td><a href="../TermAssociation/">TermAssociation</a></td>
<td>An association between an activity and a term, potentially with extensions</td>
<td>no</td>
</tr>
<tr>
<td><a href="../BiologicalProcessAssociation/">BiologicalProcessAssociation</a></td>
<td>An association between an activity and a biological process term</td>
<td><a href="../EnabledByProteinComplexAssociation/">EnabledByProteinComplexAssociation</a></td>
<td>An association between an activity and a protein complex</td>
<td>no</td>
</tr>
<tr>
<td><a href="../MoleculeAssociation/">MoleculeAssociation</a></td>
<td>An association between an activity and a molecule term</td>
<td><a href="../CausalAssociation/">CausalAssociation</a></td>
<td>A causal association between two activities</td>
<td>no</td>
</tr>
<tr>
<td><a href="../CellularAnatomicalEntityAssociation/">CellularAnatomicalEntityAssociation</a></td>
<td>An association between an activity and a cellular anatomical entity term</td>
<td><a href="../MolecularFunctionAssociation/">MolecularFunctionAssociation</a></td>
<td>An association between an activity and a molecular function term</td>
<td>no</td>
</tr>
<tr>
<td><a href="../Association/">Association</a></td>
<td>An abstract grouping for different kinds of evidence-associated provenance</td>
<td><a href="../EnabledByAssociation/">EnabledByAssociation</a></td>
<td>An association between an activity and the gene product or complex that carri...</td>
<td>no</td>
</tr>
</tbody>
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70 changes: 35 additions & 35 deletions id/index.html
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Expand Up @@ -325,13 +325,18 @@ <h2 id="applicable-classes">Applicable Classes</h2>
</thead>
<tbody>
<tr>
<td><a href="../GeneProductTermObject/">GeneProductTermObject</a></td>
<td>A term object that represents a gene product term from GO or UniProtKB</td>
<td><a href="../PublicationObject/">PublicationObject</a></td>
<td>An object that represents a publication or other kind of reference</td>
<td>no</td>
</tr>
<tr>
<td><a href="../Activity/">Activity</a></td>
<td>An individual activity in a causal model, representing the individual molecul...</td>
<td><a href="../PredicateTermObject/">PredicateTermObject</a></td>
<td>A term object that represents a taxon term from NCBITaxon</td>
<td>no</td>
</tr>
<tr>
<td><a href="../TermObject/">TermObject</a></td>
<td>An abstract class for all ontology term objects</td>
<td>no</td>
</tr>
<tr>
Expand All @@ -340,8 +345,8 @@ <h2 id="applicable-classes">Applicable Classes</h2>
<td>no</td>
</tr>
<tr>
<td><a href="../PhaseTermObject/">PhaseTermObject</a></td>
<td>A term object that represents a phase term from GO or UBERON</td>
<td><a href="../Model/">Model</a></td>
<td>A model of a biological program consisting of a set of causally connected act...</td>
<td>no</td>
</tr>
<tr>
Expand All @@ -350,68 +355,63 @@ <h2 id="applicable-classes">Applicable Classes</h2>
<td>no</td>
</tr>
<tr>
<td><a href="../MoleculeTermObject/">MoleculeTermObject</a></td>
<td>A term object that represents a molecule term from CHEBI or UniProtKB</td>
<td>no</td>
</tr>
<tr>
<td><a href="../PredicateTermObject/">PredicateTermObject</a></td>
<td>A term object that represents a taxon term from NCBITaxon</td>
<td><a href="../GeneProductTermObject/">GeneProductTermObject</a></td>
<td>A term object that represents a gene product term from GO or UniProtKB</td>
<td>no</td>
</tr>
<tr>
<td><a href="../Object/">Object</a></td>
<td>An abstract class for all identified objects in a model</td>
<td><a href="../CellularAnatomicalEntityTermObject/">CellularAnatomicalEntityTermObject</a></td>
<td>A term object that represents a cellular anatomical entity term from GO</td>
<td>no</td>
</tr>
<tr>
<td><a href="../BiologicalProcessTermObject/">BiologicalProcessTermObject</a></td>
<td>A term object that represents a biological process term from GO</td>
<td><a href="../CellTypeTermObject/">CellTypeTermObject</a></td>
<td>A term object that represents a cell type term from CL</td>
<td>no</td>
</tr>
<tr>
<td><a href="../CellTypeTermObject/">CellTypeTermObject</a></td>
<td>A term object that represents a cell type term from CL</td>
<td><a href="../TaxonTermObject/">TaxonTermObject</a></td>
<td>A term object that represents a taxon term from NCBITaxon</td>
<td>no</td>
</tr>
<tr>
<td><a href="../GrossAnatomicalStructureTermObject/">GrossAnatomicalStructureTermObject</a></td>
<td>A term object that represents a gross anatomical structure term from UBERON</td>
<td><a href="../ProteinComplexTermObject/">ProteinComplexTermObject</a></td>
<td>A term object that represents a protein complex term from GO</td>
<td>no</td>
</tr>
<tr>
<td><a href="../PublicationObject/">PublicationObject</a></td>
<td>An object that represents a publication or other kind of reference</td>
<td><a href="../BiologicalProcessTermObject/">BiologicalProcessTermObject</a></td>
<td>A term object that represents a biological process term from GO</td>
<td>no</td>
</tr>
<tr>
<td><a href="../EvidenceTermObject/">EvidenceTermObject</a></td>
<td>A term object that represents an evidence term from ECO</td>
<td><a href="../GrossAnatomicalStructureTermObject/">GrossAnatomicalStructureTermObject</a></td>
<td>A term object that represents a gross anatomical structure term from UBERON</td>
<td>no</td>
</tr>
<tr>
<td><a href="../CellularAnatomicalEntityTermObject/">CellularAnatomicalEntityTermObject</a></td>
<td>A term object that represents a cellular anatomical entity term from GO</td>
<td><a href="../Object/">Object</a></td>
<td>An abstract class for all identified objects in a model</td>
<td>no</td>
</tr>
<tr>
<td><a href="../TaxonTermObject/">TaxonTermObject</a></td>
<td>A term object that represents a taxon term from NCBITaxon</td>
<td><a href="../Activity/">Activity</a></td>
<td>An individual activity in a causal model, representing the individual molecul...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../ProteinComplexTermObject/">ProteinComplexTermObject</a></td>
<td>A term object that represents a protein complex term from GO</td>
<td><a href="../EvidenceTermObject/">EvidenceTermObject</a></td>
<td>A term object that represents an evidence term from ECO</td>
<td>no</td>
</tr>
<tr>
<td><a href="../TermObject/">TermObject</a></td>
<td>An abstract class for all ontology term objects</td>
<td><a href="../MoleculeTermObject/">MoleculeTermObject</a></td>
<td>A term object that represents a molecule term from CHEBI or UniProtKB</td>
<td>no</td>
</tr>
<tr>
<td><a href="../Model/">Model</a></td>
<td>A model of a biological program consisting of a set of causally connected act...</td>
<td><a href="../PhaseTermObject/">PhaseTermObject</a></td>
<td>A term object that represents a phase term from GO or UBERON</td>
<td>no</td>
</tr>
</tbody>
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60 changes: 30 additions & 30 deletions label/index.html
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Original file line number Diff line number Diff line change
Expand Up @@ -338,38 +338,38 @@ <h2 id="applicable-classes">Applicable Classes</h2>
</thead>
<tbody>
<tr>
<td><a href="../GeneProductTermObject/">GeneProductTermObject</a></td>
<td>A term object that represents a gene product term from GO or UniProtKB</td>
<td><a href="../PublicationObject/">PublicationObject</a></td>
<td>An object that represents a publication or other kind of reference</td>
<td>no</td>
</tr>
<tr>
<td><a href="../PhaseTermObject/">PhaseTermObject</a></td>
<td>A term object that represents a phase term from GO or UBERON</td>
<td><a href="../PredicateTermObject/">PredicateTermObject</a></td>
<td>A term object that represents a taxon term from NCBITaxon</td>
<td>no</td>
</tr>
<tr>
<td><a href="../InformationBiomacromoleculeTermObject/">InformationBiomacromoleculeTermObject</a></td>
<td>An abstract class for all information biomacromolecule term objects</td>
<td><a href="../TermObject/">TermObject</a></td>
<td>An abstract class for all ontology term objects</td>
<td>no</td>
</tr>
<tr>
<td><a href="../MoleculeTermObject/">MoleculeTermObject</a></td>
<td>A term object that represents a molecule term from CHEBI or UniProtKB</td>
<td><a href="../MolecularFunctionTermObject/">MolecularFunctionTermObject</a></td>
<td>A term object that represents a molecular function term from GO</td>
<td>no</td>
</tr>
<tr>
<td><a href="../PredicateTermObject/">PredicateTermObject</a></td>
<td>A term object that represents a taxon term from NCBITaxon</td>
<td><a href="../InformationBiomacromoleculeTermObject/">InformationBiomacromoleculeTermObject</a></td>
<td>An abstract class for all information biomacromolecule term objects</td>
<td>no</td>
</tr>
<tr>
<td><a href="../Object/">Object</a></td>
<td>An abstract class for all identified objects in a model</td>
<td><a href="../GeneProductTermObject/">GeneProductTermObject</a></td>
<td>A term object that represents a gene product term from GO or UniProtKB</td>
<td>no</td>
</tr>
<tr>
<td><a href="../BiologicalProcessTermObject/">BiologicalProcessTermObject</a></td>
<td>A term object that represents a biological process term from GO</td>
<td><a href="../CellularAnatomicalEntityTermObject/">CellularAnatomicalEntityTermObject</a></td>
<td>A term object that represents a cellular anatomical entity term from GO</td>
<td>no</td>
</tr>
<tr>
Expand All @@ -378,43 +378,43 @@ <h2 id="applicable-classes">Applicable Classes</h2>
<td>no</td>
</tr>
<tr>
<td><a href="../GrossAnatomicalStructureTermObject/">GrossAnatomicalStructureTermObject</a></td>
<td>A term object that represents a gross anatomical structure term from UBERON</td>
<td><a href="../TaxonTermObject/">TaxonTermObject</a></td>
<td>A term object that represents a taxon term from NCBITaxon</td>
<td>no</td>
</tr>
<tr>
<td><a href="../PublicationObject/">PublicationObject</a></td>
<td>An object that represents a publication or other kind of reference</td>
<td><a href="../ProteinComplexTermObject/">ProteinComplexTermObject</a></td>
<td>A term object that represents a protein complex term from GO</td>
<td>no</td>
</tr>
<tr>
<td><a href="../EvidenceTermObject/">EvidenceTermObject</a></td>
<td>A term object that represents an evidence term from ECO</td>
<td><a href="../BiologicalProcessTermObject/">BiologicalProcessTermObject</a></td>
<td>A term object that represents a biological process term from GO</td>
<td>no</td>
</tr>
<tr>
<td><a href="../CellularAnatomicalEntityTermObject/">CellularAnatomicalEntityTermObject</a></td>
<td>A term object that represents a cellular anatomical entity term from GO</td>
<td><a href="../GrossAnatomicalStructureTermObject/">GrossAnatomicalStructureTermObject</a></td>
<td>A term object that represents a gross anatomical structure term from UBERON</td>
<td>no</td>
</tr>
<tr>
<td><a href="../TaxonTermObject/">TaxonTermObject</a></td>
<td>A term object that represents a taxon term from NCBITaxon</td>
<td><a href="../Object/">Object</a></td>
<td>An abstract class for all identified objects in a model</td>
<td>no</td>
</tr>
<tr>
<td><a href="../ProteinComplexTermObject/">ProteinComplexTermObject</a></td>
<td>A term object that represents a protein complex term from GO</td>
<td><a href="../MoleculeTermObject/">MoleculeTermObject</a></td>
<td>A term object that represents a molecule term from CHEBI or UniProtKB</td>
<td>no</td>
</tr>
<tr>
<td><a href="../TermObject/">TermObject</a></td>
<td>An abstract class for all ontology term objects</td>
<td><a href="../EvidenceTermObject/">EvidenceTermObject</a></td>
<td>A term object that represents an evidence term from ECO</td>
<td>no</td>
</tr>
<tr>
<td><a href="../MolecularFunctionTermObject/">MolecularFunctionTermObject</a></td>
<td>A term object that represents a molecular function term from GO</td>
<td><a href="../PhaseTermObject/">PhaseTermObject</a></td>
<td>A term object that represents a phase term from GO or UBERON</td>
<td>no</td>
</tr>
</tbody>
Expand Down
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