Filter uninformative warning from test output

geneontology · Aug 1, 2024 · 23696d9 · 23696d9
1 parent ad543f4
commit 23696d9
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Showing 2 changed files with 11 additions and 6 deletions.
diff --git a/tests/test_data.py b/tests/test_data.py
@@ -1,16 +1,19 @@
 """Data test."""
-import os
+
 import glob
+import os
 
+import pytest
 from linkml_runtime.loaders import yaml_loader
-from gocam.datamodel import Model
 
-ROOT = os.path.join(os.path.dirname(__file__), '..')
-DATA_DIR = os.path.join(ROOT, "src", "data", "examples")
+from gocam.datamodel import Model
+from tests import EXAMPLES_DIR
 
-EXAMPLE_FILES = glob.glob(os.path.join(DATA_DIR, '*.yaml'))
+EXAMPLE_FILES = glob.glob(os.path.join(EXAMPLES_DIR, "*.yaml"))
 
 
+# linkml-linkml_runtime.loaders.yaml_loader still uses load_obj. Disable capturing this warning.
+@pytest.mark.filterwarnings("ignore::pydantic.warnings.PydanticDeprecatedSince20")
 def test_data():
     """Data test."""
     for path in EXAMPLE_FILES:

diff --git a/tests/test_translation/test_minerva_wrapper.py b/tests/test_translation/test_minerva_wrapper.py
@@ -17,7 +17,9 @@ def test_api(model_local_id):
     assert model is not None
 
 
-@pytest.mark.parametrize("base_name", ["minerva-663d668500002178", "minerva-5b91dbd100002057"])
+@pytest.mark.parametrize(
+    "base_name", ["minerva-663d668500002178", "minerva-5b91dbd100002057"]
+)
 def test_object(base_name):
     mw = MinervaWrapper()
     with open(INPUT_DIR / f"{base_name}.json", "r") as f: