Deployed e29440e with MkDocs version: 1.6.0

Activity/index.html

@@ -228,12 +228,39 @@ <h1 id="class-activity">Class: Activity</h1>
     click EnabledByAssociation href "../EnabledByAssociation"
 
 
-      Activity : has_direct_input
+      Activity : has_input
 
 
 
 
-    Activity --&gt; "0..1" MoleculeAssociation : has_direct_input
+    Activity --&gt; "*" MoleculeAssociation : has_input
+    click MoleculeAssociation href "../MoleculeAssociation"
+
+
+      Activity : has_output
+
+
+
+
+    Activity --&gt; "*" MoleculeAssociation : has_output
+    click MoleculeAssociation href "../MoleculeAssociation"
+
+
+      Activity : has_primary_input
+
+
+
+
+    Activity --&gt; "0..1" MoleculeAssociation : has_primary_input
+    click MoleculeAssociation href "../MoleculeAssociation"
+
+
+      Activity : has_primary_output
+
+
+
+
+    Activity --&gt; "0..1" MoleculeAssociation : has_primary_output
     click MoleculeAssociation href "../MoleculeAssociation"
 
 
@@ -320,12 +347,30 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../has_direct_input/">has_direct_input</a></td>
-<td>0..1 <br/> <a href="../MoleculeAssociation/">MoleculeAssociation</a></td>
+<td><a href="../has_input/">has_input</a></td>
+<td>* <br/> <a href="../MoleculeAssociation/">MoleculeAssociation</a></td>
 <td>The input molecules that are directly consumed by the activity</td>
 <td>direct</td>
 </tr>
 <tr>
+<td><a href="../has_primary_input/">has_primary_input</a></td>
+<td>0..1 <br/> <a href="../MoleculeAssociation/">MoleculeAssociation</a></td>
+<td>The primary input molecule that is directly consumed by the activity</td>
+<td>direct</td>
+</tr>
+<tr>
+<td><a href="../has_output/">has_output</a></td>
+<td>* <br/> <a href="../MoleculeAssociation/">MoleculeAssociation</a></td>
+<td>The output molecules that are directly produced by the activity</td>
+<td>direct</td>
+</tr>
+<tr>
+<td><a href="../has_primary_output/">has_primary_output</a></td>
+<td>0..1 <br/> <a href="../MoleculeAssociation/">MoleculeAssociation</a></td>
+<td>The primary output molecule that is directly produced by the activity</td>
+<td>direct</td>
+</tr>
+<tr>
 <td><a href="../causal_associations/">causal_associations</a></td>
 <td>* <br/> <a href="../CausalAssociation/">CausalAssociation</a></td>
 <td>The causal associations that connect this activity to other activities</td>
@@ -457,11 +502,42 @@ <h3 id="direct">Direct</h3>
     - Activity
     range: BiologicalProcessAssociation
     inlined: true
-  has_direct_input:
-    name: has_direct_input
+  has_input:
+    name: has_input
     description: The input molecules that are directly consumed by the activity
     from_schema: https://w3id.org/gocam
     rank: 1000
+    multivalued: true
+    domain_of:
+    - Activity
+    range: MoleculeAssociation
+    inlined: true
+    inlined_as_list: true
+  has_primary_input:
+    name: has_primary_input
+    description: The primary input molecule that is directly consumed by the activity
+    from_schema: https://w3id.org/gocam
+    rank: 1000
+    domain_of:
+    - Activity
+    range: MoleculeAssociation
+    inlined: true
+  has_output:
+    name: has_output
+    description: The output molecules that are directly produced by the activity
+    from_schema: https://w3id.org/gocam
+    rank: 1000
+    multivalued: true
+    domain_of:
+    - Activity
+    range: MoleculeAssociation
+    inlined: true
+    inlined_as_list: true
+  has_primary_output:
+    name: has_primary_output
+    description: The primary output molecule that is directly produced by the activity
+    from_schema: https://w3id.org/gocam
+    rank: 1000
     domain_of:
     - Activity
     range: MoleculeAssociation
@@ -566,12 +642,49 @@ <h3 id="induced">Induced</h3>
     - Activity
     range: BiologicalProcessAssociation
     inlined: true
-  has_direct_input:
-    name: has_direct_input
+  has_input:
+    name: has_input
     description: The input molecules that are directly consumed by the activity
     from_schema: https://w3id.org/gocam
     rank: 1000
-    alias: has_direct_input
+    multivalued: true
+    alias: has_input
+    owner: Activity
+    domain_of:
+    - Activity
+    range: MoleculeAssociation
+    inlined: true
+    inlined_as_list: true
+  has_primary_input:
+    name: has_primary_input
+    description: The primary input molecule that is directly consumed by the activity
+    from_schema: https://w3id.org/gocam
+    rank: 1000
+    alias: has_primary_input
+    owner: Activity
+    domain_of:
+    - Activity
+    range: MoleculeAssociation
+    inlined: true
+  has_output:
+    name: has_output
+    description: The output molecules that are directly produced by the activity
+    from_schema: https://w3id.org/gocam
+    rank: 1000
+    multivalued: true
+    alias: has_output
+    owner: Activity
+    domain_of:
+    - Activity
+    range: MoleculeAssociation
+    inlined: true
+    inlined_as_list: true
+  has_primary_output:
+    name: has_primary_output
+    description: The primary output molecule that is directly produced by the activity
+    from_schema: https://w3id.org/gocam
+    rank: 1000
+    alias: has_primary_output
     owner: Activity
     domain_of:
     - Activity

MoleculeAssociation/index.html

@@ -304,7 +304,25 @@ <h2 id="usages">Usages</h2>
 <tbody>
 <tr>
 <td><a href="../Activity/">Activity</a></td>
-<td><a href="../has_direct_input/">has_direct_input</a></td>
+<td><a href="../has_input/">has_input</a></td>
+<td>range</td>
+<td><a href="./">MoleculeAssociation</a></td>
+</tr>
+<tr>
+<td><a href="../Activity/">Activity</a></td>
+<td><a href="../has_primary_input/">has_primary_input</a></td>
+<td>range</td>
+<td><a href="./">MoleculeAssociation</a></td>
+</tr>
+<tr>
+<td><a href="../Activity/">Activity</a></td>
+<td><a href="../has_output/">has_output</a></td>
+<td>range</td>
+<td><a href="./">MoleculeAssociation</a></td>
+</tr>
+<tr>
+<td><a href="../Activity/">Activity</a></td>
+<td><a href="../has_primary_output/">has_primary_output</a></td>
 <td>range</td>
 <td><a href="./">MoleculeAssociation</a></td>
 </tr>

evidence/index.html

@@ -331,8 +331,13 @@ <h2 id="applicable-classes">Applicable Classes</h2>
 </thead>
 <tbody>
 <tr>
-<td><a href="../Association/">Association</a></td>
-<td>An abstract grouping for different kinds of evidence-associated provenance</td>
+<td><a href="../EnabledByAssociation/">EnabledByAssociation</a></td>
+<td>An association between an activity and the gene product or complex that carri...</td>
+<td>no</td>
+</tr>
+<tr>
+<td><a href="../EnabledByGeneProductAssociation/">EnabledByGeneProductAssociation</a></td>
+<td>An association between an activity and a gene product</td>
 <td>no</td>
 </tr>
 <tr>
@@ -341,18 +346,18 @@ <h2 id="applicable-classes">Applicable Classes</h2>
 <td>no</td>
 </tr>
 <tr>
-<td><a href="../CellularAnatomicalEntityAssociation/">CellularAnatomicalEntityAssociation</a></td>
-<td>An association between an activity and a cellular anatomical entity term</td>
+<td><a href="../TermAssociation/">TermAssociation</a></td>
+<td>An association between an activity and a term, potentially with extensions</td>
 <td>no</td>
 </tr>
 <tr>
-<td><a href="../MoleculeAssociation/">MoleculeAssociation</a></td>
-<td>An association between an activity and a molecule term</td>
+<td><a href="../BiologicalProcessAssociation/">BiologicalProcessAssociation</a></td>
+<td>An association between an activity and a biological process term</td>
 <td>no</td>
 </tr>
 <tr>
-<td><a href="../TermAssociation/">TermAssociation</a></td>
-<td>An association between an activity and a term, potentially with extensions</td>
+<td><a href="../MolecularFunctionAssociation/">MolecularFunctionAssociation</a></td>
+<td>An association between an activity and a molecular function term</td>
 <td>no</td>
 </tr>
 <tr>
@@ -361,33 +366,28 @@ <h2 id="applicable-classes">Applicable Classes</h2>
 <td>no</td>
 </tr>
 <tr>
-<td><a href="../EnabledByProteinComplexAssociation/">EnabledByProteinComplexAssociation</a></td>
-<td>An association between an activity and a protein complex</td>
-<td>no</td>
-</tr>
-<tr>
-<td><a href="../MolecularFunctionAssociation/">MolecularFunctionAssociation</a></td>
-<td>An association between an activity and a molecular function term</td>
+<td><a href="../CellTypeAssociation/">CellTypeAssociation</a></td>
+<td>An association between an activity and a cell type term</td>
 <td>no</td>
 </tr>
 <tr>
-<td><a href="../EnabledByGeneProductAssociation/">EnabledByGeneProductAssociation</a></td>
-<td>An association between an activity and a gene product</td>
+<td><a href="../EnabledByProteinComplexAssociation/">EnabledByProteinComplexAssociation</a></td>
+<td>An association between an activity and a protein complex</td>
 <td>no</td>
 </tr>
 <tr>
-<td><a href="../CellTypeAssociation/">CellTypeAssociation</a></td>
-<td>An association between an activity and a cell type term</td>
+<td><a href="../CellularAnatomicalEntityAssociation/">CellularAnatomicalEntityAssociation</a></td>
+<td>An association between an activity and a cellular anatomical entity term</td>
 <td>no</td>
 </tr>
 <tr>
-<td><a href="../EnabledByAssociation/">EnabledByAssociation</a></td>
-<td>An association between an activity and the gene product or complex that carri...</td>
+<td><a href="../MoleculeAssociation/">MoleculeAssociation</a></td>
+<td>An association between an activity and a molecule term</td>
 <td>no</td>
 </tr>
 <tr>
-<td><a href="../BiologicalProcessAssociation/">BiologicalProcessAssociation</a></td>
-<td>An association between an activity and a biological process term</td>
+<td><a href="../Association/">Association</a></td>
+<td>An abstract grouping for different kinds of evidence-associated provenance</td>
 <td>no</td>
 </tr>
 </tbody>