For #2093

geneontology · Oct 19, 2023 · fa64781 · fa64781
1 parent 0c98e9f
commit fa64781
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/scripts/Makefile-gaf-reprocess b/scripts/Makefile-gaf-reprocess
@@ -23,11 +23,11 @@ $(ROOT_PATH)/gaferencer-products/%: $(ROOT_PATH)/gaferencer-products/%.gz
 
 $(ROOT_PATH)/annotations_new/%.gaf: $(ROOT_PATH)/annotations/%.gaf $(ROOT_PATH)/gaferencer-products/all.gaferences.json
 	mkdir -p $(ROOT_PATH)/annotations_new
-	ontobio-parse-assocs.py -f $< -F gaf -o $@ -I $(ROOT_PATH)/gaferencer-products/all.gaferences.json --report-md /tmp/report.md --report-json /tmp/report.json --allow_paint -l all convert --to gaf -n 2.2
+	ontobio-parse-assocs.py -f $< -F gaf -o $@ -I $(ROOT_PATH)/gaferencer-products/all.gaferences.json --report-md /tmp/report.md --report-json /tmp/report.json -m $(ROOT_PATH)/metadata --allow_paint -l all convert --to gaf -n 2.2
 
 $(ROOT_PATH)/annotations_new/%.gpad: $(ROOT_PATH)/annotations/%.gpad $(ROOT_PATH)/gaferencer-products/all.gaferences.json
 	mkdir -p $(ROOT_PATH)/annotations_new
-	ontobio-parse-assocs.py -f $< -F gpad -o $@ -I $(ROOT_PATH)/gaferencer-products/all.gaferences.json --report-md /tmp/report.md --report-json /tmp/report.json --allow_paint -l all convert --to gpad
+	ontobio-parse-assocs.py -f $< -F gpad -o $@ -I $(ROOT_PATH)/gaferencer-products/all.gaferences.json --report-md /tmp/report.md --report-json /tmp/report.json -m $(ROOT_PATH)/metadata --allow_paint -l all convert --to gpad
 
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