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Update gorule-0000027.md
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Updated
pgaudet authored Dec 15, 2023
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6 changes: 3 additions & 3 deletions metadata/rules/gorule-0000027.md
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- DB (GAF and GPAD column 1); and all DB abbreviations in 'with' field (GAF column 8; GPAD column 7) and in the annotation extensions (GAF column 16; GPAD column 11) must be in [db-xrefs.yaml](https://github.com/geneontology/go-site/blob/master/metadata/db-xrefs.yaml) (see below)
- id_syntax information in the [db-xrefs.yaml](https://github.com/geneontology/go-site/blob/master/metadata/db-xrefs.yaml) file can be used to validate local identifiers.
- The 'with' field can additionally contain GO terms, when the Evidence code is IC. GO terms are checked in GORULE:0000001.
- The 'with' field can either contain GO terms, when the Evidence code is IC. GO terms are checked in GORULE:0000001, or DB:ID, which are checked as Columns 1 & 2.
- The `assigned_by` field (GAF column 15; GPAD column 10) is checked against [groups.yaml](https://github.com/geneontology/go-site/blob/master/metadata/groups.yaml)

- TBC (thy may be GORULE:0000001) All GO IDs must be extant in current ontology: GO IDs can be present in Columns 5, 8, and 16 of GAF (4, 7, 11 in GPAD).
- The 'extension' field (GAF column 16; GPAD column 11) can either contain GO terms, or DB:ID, which are checked as Columns 1 & 2.
- TBC (this may be GORULE:0000001) All GO IDs must be extant in current ontology: GO IDs can be present in Columns 5, 8, and 16 of GAF (4, 7, 11 in GPAD).

### Additional notes on identifiers

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