obsoleted terms for #29050

src/ontology/go-edit.obo

@@ -203785,7 +203785,6 @@ synonym: "'de novo' NAD biosynthetic process from tryptophan" BROAD []
 synonym: "de novo NAD biosynthetic process from tryptophan" RELATED []
 xref: MetaCyc:NADSYN-PWY {source="skos:narrowMatch"}
 xref: MetaCyc:PWY-5653 {source="skos:narrowMatch"}
-is_a: GO:0034627 ! 'de novo' NAD biosynthetic process
 intersection_of: GO:0009058 ! biosynthetic process
 intersection_of: has_primary_input CHEBI:57912 ! L-tryptophan zwitterion
 intersection_of: has_primary_output CHEBI:57540 ! NAD(1-)
@@ -203812,16 +203811,16 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i
 
 [Term]
 id: GO:0034356
-name: NAD biosynthesis via nicotinamide riboside salvage pathway
+name: obsolete NAD biosynthesis via nicotinamide riboside salvage pathway
 namespace: biological_process
-def: "The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide (NAD) from the nicotinamide riboside (NR)." [PMID:17482543]
+def: "OBSOLETE. The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide (NAD) from the nicotinamide riboside (NR)." [PMID:17482543]
+comment: This term was obsoleted because it is the unique child class of NAD biosynthetic process via the salvage pathway ; GO:0034355.
 synonym: "nicotinamide riboside salvage pathway" EXACT []
 synonym: "NR salvage pathway" EXACT []
 xref: MetaCyc:PWY3O-4106
-intersection_of: GO:0043094 ! metabolic compound salvage
-intersection_of: has_primary_input CHEBI:15927 ! N-ribosylnicotinamide
-intersection_of: has_primary_output CHEBI:57540 ! NAD(1-)
 property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29050" xsd:anyURI
+is_obsolete: true
+replaced_by: GO:0034355
 
 [Term]
 id: GO:0034357
@@ -206413,12 +206412,15 @@ is_a: GO:0019368 ! fatty acid elongation, unsaturated fatty acid
 
 [Term]
 id: GO:0034627
-name: 'de novo' NAD biosynthetic process
+name: obsolete 'de novo' NAD biosynthetic process
 namespace: biological_process
-def: "The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide (NAD), beginning with the synthesis of tryptophan or aspartate from simpler precursors; biosynthesis may be of either the oxidized form, NAD+, or the reduced form, NADH." [GOC:imk, PMID:17161604]
+def: "OBSOLETE. The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide (NAD), beginning with the synthesis of tryptophan or aspartate from simpler precursors; biosynthesis may be of either the oxidized form, NAD+, or the reduced form, NADH." [GOC:imk, PMID:17161604]
+comment: This term was obsoleted because it is an unnecessary grouping term.
 synonym: "de novo NAD biosynthetic process" RELATED []
-is_a: GO:0009435 ! NAD biosynthetic process
 property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29050" xsd:anyURI
+is_obsolete: true
+consider: GO:0034354
+consider: GO:0034628
 
 [Term]
 id: GO:0034628
@@ -206436,7 +206438,6 @@ synonym: "nicotinamide nucleotide synthesis from aspartate" EXACT []
 xref: MetaCyc:PWY-8277 {source="skos:narrowMatch"}
 xref: MetaCyc:PWY-8352 {source="skos:narrowMatch"}
 xref: MetaCyc:PYRIDNUCSYN-PWY {source="skos:narrowMatch"}
-is_a: GO:0034627 ! 'de novo' NAD biosynthetic process
 intersection_of: GO:0009058 ! biosynthetic process
 intersection_of: has_primary_input CHEBI:29991 ! L-aspartate(1-)
 intersection_of: has_primary_output CHEBI:57540 ! NAD(1-)