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Merge pull request #29195 from geneontology/issue-29194
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fixed labels for #29194
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@pgaudet
pgaudet authored Nov 12, 2024
2 parents 8c87944 + e2a06b9 commit 9aeaa5b
Showing 1 changed file with 65 additions and 44 deletions.
109 changes: 65 additions & 44 deletions src/ontology/go-edit.obo
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Expand Up @@ -230069,11 +230069,14 @@ creation_date: 2011-06-22T04:09:41Z

[Term]
id: GO:0039519
name: modulation by virus of host autophagy
name: obsolete modulation by virus of host autophagy
namespace: biological_process
def: "Any process in which a virus effect a change in the frequency, rate or extent of autophagy in the host." [GOC:bf, GOC:sp]
def: "OBSOLETE. Any process in which a virus effect a change in the frequency, rate or extent of autophagy in the host." [GOC:bf, GOC:sp]
comment: This term was osboleted because it represents the same process as symbiont-mediated perturbation of host autophagy ; GO:0075071.
synonym: "regulation by virus of host autophagy" EXACT [GOC:bf]
is_a: GO:0019054 ! modulation by virus of host cellular process
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI
is_obsolete: true
replaced_by: GO:0075071
created_by: bf
creation_date: 2011-06-22T04:19:19Z

Expand All @@ -230096,21 +230099,23 @@ creation_date: 2011-06-22T04:24:47Z

[Term]
id: GO:0039521
name: suppression by virus of host autophagy
name: obsolete suppression by virus of host autophagy
namespace: biological_process
def: "Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of autophagy in the host." [GOC:bf, GOC:sp, UniProtKB-KW:KW-1083, VZ:845]
def: "OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of autophagy in the host." [GOC:bf, GOC:sp]
comment: This term was obsoleted because it represents the same process as symbiont-mediated suppression of host autophagy ; GO:0140321.
synonym: "inhibition by virus of host autophagy" EXACT [GOC:bf]
synonym: "inhibition of host autophagy by virus" EXACT [UniProtKB-KW:KW-1083]
synonym: "negative regulation by virus of host autophagy" BROAD [GOC:bf]
is_a: GO:0039519 ! modulation by virus of host autophagy
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI
is_obsolete: true
replaced_by: GO:0140321
created_by: bf
creation_date: 2011-06-22T04:30:11Z

[Term]
id: GO:0039522
name: symbiont-mediated suppression of host mRNA export from nucleus
namespace: biological_process
def: "A process in which a symbiont inhibits or disrupts the normal movement of mRNA from the nucleus to the cytoplasm of the host cell, leading to shutoff of host protein expression. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:bf, GOC:sp]
def: "A process in which a symbiont inhibits or disrupts the normal movement of mRNA from the nucleus to the cytoplasm of the host cell, leading to shutoff of host protein expression. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:bf, GOC:sp, PMID:22334672]
synonym: "inhibition by virus of host mRNA nuclear export" NARROW [GOC:bf]
synonym: "inhibition of host mRNA nuclear export by virus" NARROW [UniProtKB-KW:KW-1099]
synonym: "negative regulation by virus of host mRNA nuclear export" BROAD [GOC:bf]
Expand Down Expand Up @@ -231480,29 +231485,35 @@ creation_date: 2012-08-10T14:46:03Z

[Term]
id: GO:0039635
name: suppression by virus of host peptidoglycan biosynthetic process
name: symbiont-mediated suppression of host peptidoglycan biosynthetic process
namespace: biological_process
def: "Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of peptidoglycan biosynthesis in the host organism. Peptidoglycans are any of a class of glycoconjugates found in bacterial cell walls." [GOC:bf, GOC:bm, GOC:jl]
synonym: "suppression by virus of host peptidoglycan biosynthetic process" NARROW []
synonym: "viral inhibition of host peptidoglycan biosynthesis" RELATED [GOC:bf]
is_a: GO:0039636 ! suppression by virus of host cell wall biogenesis
intersection_of: GO:0044003 ! symbiont-mediated perturbation of host process
intersection_of: negatively_regulates_in_another_organism GO:0009252 ! peptidoglycan biosynthetic process
created_by: bf
creation_date: 2012-08-10T14:58:12Z

[Term]
id: GO:0039636
name: suppression by virus of host cell wall biogenesis
name: symbiont-mediated suppression of host cell wall biogenesis
namespace: biological_process
def: "Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of cell wall biogenesis in the host organism. Cell wall biogenesis includes the biosynthesis of constituent macromolecules, and the assembly and arrangement of these constituent parts." [GOC:bf, GOC:bm, GOC:jl]
is_a: GO:0019054 ! modulation by virus of host cellular process
synonym: "suppression by virus of host cell wall biogenesis" NARROW []
intersection_of: GO:0044003 ! symbiont-mediated perturbation of host process
intersection_of: negatively_regulates_in_another_organism GO:0042546 ! cell wall biogenesis
created_by: bf
creation_date: 2012-08-10T15:04:12Z

[Term]
id: GO:0039637
name: catabolism by virus of host DNA
name: obsolete catabolism by virus of host DNA
namespace: biological_process
def: "The breakdown of host DNA, deoxyribonucleic acid, by a virus." [GOC:bf, GOC:bm, GOC:jl]
is_a: GO:0019048 ! modulation by virus of host process
def: "OBSOLETE. The breakdown of host DNA, deoxyribonucleic acid, by a virus." [GOC:bf, GOC:bm, GOC:jl]
comment: This term was obsoleted because it was an unnecessary grouping class.
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI
is_obsolete: true
created_by: bf
creation_date: 2012-08-10T15:59:22Z

Expand Down Expand Up @@ -231539,7 +231550,7 @@ synonym: "cytolysis by virus via suppression of host peptidoglycan biosynthetic
synonym: "viral exit by cytolysis via suppression of host peptidoglycan biosynthetic process" EXACT []
synonym: "viral release by cytolysis via suppression of host peptidoglycan biosynthetic process" EXACT []
is_a: GO:0044659 ! viral release from host cell by cytolysis
relationship: has_part GO:0039635 ! suppression by virus of host peptidoglycan biosynthetic process
relationship: has_part GO:0039635 ! symbiont-mediated suppression of host peptidoglycan biosynthetic process
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/18852" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24035" xsd:anyURI
created_by: bf
Expand Down Expand Up @@ -231924,20 +231935,22 @@ synonym: "modulation of host NK-cell activity by virus" RELATED [UniProtKB-KW:KW
synonym: "protection by virus against host NK cell cytotoxicity" EXACT [PMID:12782710]
synonym: "suppression by virus of host natural killer cell function" EXACT [PMID:15640804]
synonym: "viral immunoevasion of host NK cell" EXACT [GOC:bf]
xref: VZ:878
is_a: GO:0019049 ! virus-mediated perturbation of host defense response
relationship: has_participant CL:0000623 ! natural killer cell
created_by: bf
creation_date: 2013-09-25T11:04:53Z

[Term]
id: GO:0039672
name: suppression by virus of host natural killer cell activation
name: symbiont-mediated suppression of host natural killer cell activation
namespace: biological_process
def: "Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of natural killer cell activation in the host." [GOC:bf, GOC:jl]
synonym: "suppression by virus of host NK-cell activation" EXACT [GOC:bf, GOC:jl]
is_a: GO:0039671 ! evasion by virus of host natural killer cell activity
def: "A process in which a symbiont interferes with, inhibits or disrupts natural killer cell activation in the host. The host is defined as the larger of the organisms involved in a symbiotic interaction." [PMID:10799855]
synonym: "suppression by virus of host natural killer cell activation" NARROW []
synonym: "suppression by virus of host NK-cell activation" EXACT []
intersection_of: GO:0044003 ! symbiont-mediated perturbation of host process
intersection_of: negatively_regulates_in_another_organism GO:0030101 ! natural killer cell activation
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29010" xsd:anyURI
created_by: bf
creation_date: 2013-09-25T11:08:19Z
Expand Down Expand Up @@ -257384,15 +257397,20 @@ is_a: GO:0051701 ! biological process involved in interaction with host

[Term]
id: GO:0044418
name: translocation of DNA into host
name: obsolete translocation of DNA into host
namespace: biological_process
alt_id: GO:0051837
def: "The directed movement of DNA from an organism to a location inside its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:cc]
def: "OBSOLETE. The directed movement of DNA from an organism to a location inside its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:cc]
comment: This term was obsoleted because it was redundant with other terms.
synonym: "translocation of DNA into other organism during symbiotic interaction" BROAD [GOC:tb]
synonym: "translocation of DNA into other organism involved in symbiotic interaction" BROAD []
synonym: "transport of DNA into host" EXACT []
synonym: "transport of DNA into other organism during symbiotic interaction" BROAD []
is_a: GO:0044417 ! translocation of molecules into host
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI
is_obsolete: true
consider: GO:0075506
consider: GO:0075507
consider: GO:0075508

[Term]
id: GO:0044419
Expand Down Expand Up @@ -261686,12 +261704,13 @@ creation_date: 2014-02-06T11:43:16Z

[Term]
id: GO:0044831
name: modulation by virus of host cytokine production
name: obsolete modulation by virus of host cytokine production
namespace: biological_process
def: "Any process in which a virus modulates the frequency, rate or extent of cytokine production in its host organism." [GOC:jl]
intersection_of: GO:0075528 ! perturbation by virus of host immune response
intersection_of: regulates_in_another_organism GO:0001816 ! cytokine production
def: "OBSOLETE. Any process in which a virus modulates the frequency, rate or extent of cytokine production in its host organism." [GOC:jl]
comment: This term was obsoleted because it is an unnecessary grouping term.
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25569" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29194" xsd:anyURI
is_obsolete: true
created_by: jl
creation_date: 2014-02-06T12:49:02Z

Expand All @@ -261709,11 +261728,12 @@ creation_date: 2014-02-06T13:04:23Z

[Term]
id: GO:0044833
name: modulation by virus of host protein transport
name: obsolete modulation by virus of host protein transport
namespace: biological_process
def: "Any viral process that modulates the frequency, rate or extent of protein transport in its host organism." [GOC:jl, PMID:22334672]
intersection_of: GO:0044003 ! symbiont-mediated perturbation of host process
intersection_of: regulates_in_another_organism GO:0015031 ! protein transport
def: "OBSOLETE. Any viral process that modulates the frequency, rate or extent of protein transport in its host organism." [GOC:jl, PMID:22334672]
comment: This term was obsoleted because its definition was too vague.
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI
is_obsolete: true
created_by: jl
creation_date: 2014-02-06T13:25:52Z

Expand Down Expand Up @@ -281413,7 +281433,6 @@ namespace: biological_process
def: "Any viral process that results in the inhibition of interferon activity within the host cell." [PMID:10859382]
synonym: "negative regulation by virus of intracellular interferon activity" EXACT []
synonym: "suppression by virus of intracellular interferon activity in host" EXACT []
is_a: GO:0019049 ! virus-mediated perturbation of host defense response
is_a: GO:0075528 ! perturbation by virus of host immune response

[Term]
Expand All @@ -281422,10 +281441,7 @@ name: suppression by virus of host cytokine production
namespace: biological_process
def: "Any viral process that results in the inhibition of host cell cytokine production." [PMID:10859382]
synonym: "negative regulation by virus of host cytokine production" EXACT []
is_a: GO:0044831 ! modulation by virus of host cytokine production
is_a: GO:0140133 ! symbiont-mediated suppression of host cytokine production
intersection_of: GO:0075528 ! perturbation by virus of host immune response
intersection_of: negatively_regulates_in_another_organism GO:0001816 ! cytokine production

[Term]
id: GO:0046776
Expand Down Expand Up @@ -281518,7 +281534,8 @@ synonym: "intronless viral mRNA export from host nucleus" RELATED []
synonym: "intronless viral mRNA export out of nucleus" EXACT []
synonym: "intronless viral mRNA transport from nucleus to cytoplasm" EXACT []
synonym: "intronless viral mRNA-nucleus export" EXACT []
is_a: GO:0044417 ! translocation of molecules into host
is_a: GO:0016032 ! viral process
relationship: part_of GO:0019080 ! viral gene expression

[Term]
id: GO:0046785
Expand Down Expand Up @@ -332122,8 +332139,7 @@ name: modulation of nutrient release by host
namespace: biological_process
def: "Any process in which an organism modulates the frequency, rate or extent of the release of nutrients from its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:mtg_pamgo_17jul06]
synonym: "modulation by symbiont of nutrient release from host" EXACT []
is_a: GO:0044003 ! symbiont-mediated perturbation of host process
relationship: part_of GO:0044002 ! acquisition of nutrients from host
is_a: GO:0044002 ! acquisition of nutrients from host

[Term]
id: GO:0052092
Expand Down Expand Up @@ -425073,7 +425089,8 @@ name: degradation of host chromosome by virus
namespace: biological_process
def: "The catabolic breakdown of the DNA of a host chromosome by a virus. This occurs during infection of bacteria by some phages. It frees up a large pool of nucleoside 5'-triphophates for use in viral DNA synthesis." [PMID:163355, PMID:335083, PMID:3972821, PMID:5263754, VZ:3947]
xref: VZ:3947
is_a: GO:0039637 ! catabolism by virus of host DNA
is_a: GO:0016032 ! viral process
relationship: part_of GO:0039693 ! viral DNA genome replication

[Term]
id: GO:0099016
Expand Down Expand Up @@ -456895,7 +456912,7 @@ id: GO:0140754
name: reorganization of cellular membranes to establish viral sites of replication
namespace: biological_process
def: "A process in intracellular membranes are reorganized by viral proteins that perturb membrane integrity and can cause an extensive rearrangement of cellular membranes, forming membranous webs, which are thought to be the site of replication or certain viruses, for example the HPV virus." [PMID:19376974]
is_a: GO:0051702 ! biological process involved in interaction with symbiont
is_a: GO:0141171 ! symbiont-mediated perturbation of host membrane
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22686" xsd:anyURI
created_by: pg
creation_date: 2022-01-18T14:25:00Z
Expand All @@ -456905,7 +456922,8 @@ id: GO:0140755
name: reorganization of host cellular membranes to establish sites of replication
namespace: biological_process
def: "A process in which a virus triggers host intracellular membranes to be reorganized, forming membranous webs, which are thought to be the site of replication or certain viruses, for example the HPV virus." [PMID:34699787, PMID:4372566]
is_a: GO:0019054 ! modulation by virus of host cellular process
is_a: GO:0016032 ! viral process
is_a: GO:0141171 ! symbiont-mediated perturbation of host membrane
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22686" xsd:anyURI
created_by: pg
creation_date: 2022-01-18T17:02:36Z
Expand Down Expand Up @@ -531062,14 +531080,17 @@ creation_date: 2014-11-24T13:38:34Z

[Term]
id: GO:1903652
name: modulation by virus of host cytoplasmic transport
name: obsolete modulation by virus of host cytoplasmic transport
namespace: biological_process
def: "Modulation by an infecting virus of host cytoplasmic transport." [GO_REF:0000063, GOC:TermGenie, PMID:25049409]
def: "OBSOLETE. Modulation by an infecting virus of host cytoplasmic transport." [GO_REF:0000063, GOC:TermGenie, PMID:25049409]
comment: This term was obsoleted because it represents the same process as symbiont-mediated perturbation of host intracellular transport ; GO:0052038.
synonym: "regulation by virus of host cytoplasmic streaming" EXACT []
synonym: "regulation by virus of host cytoplasmic transport" EXACT []
synonym: "viral modulation of host cytoplasmic trafficking" EXACT []
is_a: GO:0019054 ! modulation by virus of host cellular process
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26386" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI
is_obsolete: true
replaced_by: GO:0052038
created_by: jl
creation_date: 2014-11-24T17:22:04Z

Expand Down

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