Merge pull request #29232 from geneontology/issue-29194

obsoleted terms fixes #29194

src/ontology/go-edit.obo

@@ -229812,15 +229812,16 @@ creation_date: 2010-07-02T10:18:09Z
 
 [Term]
 id: GO:0039501
-name: suppression by virus of host type I interferon production
+name: obsolete suppression by virus of host type I interferon production
 namespace: biological_process
-def: "Any viral process that results in the inhibition of host cell type I interferon production. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families." [GOC:add, GOC:bf, GOC:sp, UniProtKB-KW:KW-1113, VZ:875]
+def: "OBSOLETE. Any viral process that results in the inhibition of host cell type I interferon production. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families." [GOC:add, GOC:bf, GOC:sp]
+comment: This term was obsoleted because it represents the same process as symbiont-mediated suppression of host type I interferon-mediated signaling pathway ; GO:0039502.
 synonym: "negative regulation by virus of host type I interferon production" EXACT [GOC:bf]
 synonym: "suppression by virus of host interferon type I production" EXACT [GOC:bf]
 synonym: "suppression by virus of host type I IFN production" EXACT [GOC:bf]
-xref: VZ:875 "Inhibition of host IFN-mediated response initiation by virus"
-intersection_of: GO:0044003 ! symbiont-mediated perturbation of host process
-intersection_of: negatively_regulates_in_another_organism GO:0032606 ! type I interferon production
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29194" xsd:anyURI
+is_obsolete: true
+replaced_by: GO:0039502
 created_by: bf
 creation_date: 2011-05-11T03:53:20Z
 
@@ -231974,9 +231975,9 @@ creation_date: 2013-09-25T11:08:19Z
 
 [Term]
 id: GO:0039673
-name: symbiont-mediated perturbation of host dendritic cell mediated immune response
+name: symbiont-mediated suppression of host dendritic cell mediated immune response
 namespace: biological_process
-def: "A process in which a symbiont alters or subverts the dendritic cell mediated immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:bf, GOC:jl, UniProtKB-KW:KW-1118]
+def: "A process in which a symbiont inhibits or disrupts the dendritic cell mediated immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:bf, GOC:jl, UniProtKB-KW:KW-1118]
 synonym: "evasion by virus of host dendritic cell activity" RELATED []
 synonym: "evasion by virus of host dendritic cell response" EXACT []
 synonym: "impairing dendritic cell function by virus" EXACT [UniProtKB-KW:KW-1118]
@@ -281457,20 +281458,25 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i
 
 [Term]
 id: GO:0046774
-name: suppression by virus of host intracellular interferon activity
+name: obsolete suppression by virus of host intracellular interferon activity
 namespace: biological_process
-def: "Any viral process that results in the inhibition of interferon activity within the host cell." [PMID:10859382]
+def: "OBSOLETE. Any viral process that results in the inhibition of interferon activity within the host cell." [PMID:10859382]
+comment: This term was obsoleted because it was overlapping with symbiont-mediated suppression of host interferon-mediated signaling pathway ; GO:0140886.
 synonym: "negative regulation by virus of intracellular interferon activity" EXACT []
 synonym: "suppression by virus of intracellular interferon activity in host" EXACT []
-is_a: GO:0052027 ! symbiont-mediated perturbation of host signal transduction pathway
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29194" xsd:anyURI
+is_obsolete: true
+consider: GO:0140886
 
 [Term]
 id: GO:0046775
-name: suppression by virus of host cytokine production
+name: obsolete suppression by virus of host cytokine production
 namespace: biological_process
-def: "Any viral process that results in the inhibition of host cell cytokine production." [PMID:10859382]
+def: "OBSOLETE. Any viral process that results in the inhibition of host cell cytokine production." [PMID:10859382]
+comment: This term was obsoleted because it was an unnecessary grouping class.
 synonym: "negative regulation by virus of host cytokine production" EXACT []
-is_a: GO:0140133 ! symbiont-mediated suppression of host cytokine production
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29194" xsd:anyURI
+is_obsolete: true
 
 [Term]
 id: GO:0046776