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obsoleted terms for #29194
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pgaudet committed Nov 12, 2024
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56 changes: 36 additions & 20 deletions src/ontology/go-edit.obo
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Expand Up @@ -230069,11 +230069,14 @@ creation_date: 2011-06-22T04:09:41Z

[Term]
id: GO:0039519
name: modulation by virus of host autophagy
name: obsolete modulation by virus of host autophagy
namespace: biological_process
def: "Any process in which a virus effect a change in the frequency, rate or extent of autophagy in the host." [GOC:bf, GOC:sp]
def: "OBSOLETE. Any process in which a virus effect a change in the frequency, rate or extent of autophagy in the host." [GOC:bf, GOC:sp]
comment: This term was osboleted because it represents the same process as symbiont-mediated perturbation of host autophagy ; GO:0075071.
synonym: "regulation by virus of host autophagy" EXACT [GOC:bf]
is_a: GO:0019054 ! modulation by virus of host cellular process
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI
is_obsolete: true
replaced_by: GO:0075071
created_by: bf
creation_date: 2011-06-22T04:19:19Z

Expand All @@ -230096,13 +230099,15 @@ creation_date: 2011-06-22T04:24:47Z

[Term]
id: GO:0039521
name: suppression by virus of host autophagy
name: obsolete suppression by virus of host autophagy
namespace: biological_process
def: "Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of autophagy in the host." [GOC:bf, GOC:sp, UniProtKB-KW:KW-1083, VZ:845]
def: "OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of autophagy in the host." [GOC:bf, GOC:sp]
comment: This term was obsoleted because it represents the same process as symbiont-mediated suppression of host autophagy ; GO:0140321.
synonym: "inhibition by virus of host autophagy" EXACT [GOC:bf]
synonym: "inhibition of host autophagy by virus" EXACT [UniProtKB-KW:KW-1083]
synonym: "negative regulation by virus of host autophagy" BROAD [GOC:bf]
is_a: GO:0039519 ! modulation by virus of host autophagy
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI
is_obsolete: true
replaced_by: GO:0140321
created_by: bf
creation_date: 2011-06-22T04:30:11Z

Expand Down Expand Up @@ -231499,10 +231504,12 @@ creation_date: 2012-08-10T15:04:12Z

[Term]
id: GO:0039637
name: catabolism by virus of host DNA
name: obsolete catabolism by virus of host DNA
namespace: biological_process
def: "The breakdown of host DNA, deoxyribonucleic acid, by a virus." [GOC:bf, GOC:bm, GOC:jl]
is_a: GO:0019048 ! modulation by virus of host process
def: "OBSOLETE. The breakdown of host DNA, deoxyribonucleic acid, by a virus." [GOC:bf, GOC:bm, GOC:jl]
comment: This term was obsoleted because it was an unnecessary grouping class.
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI
is_obsolete: true
created_by: bf
creation_date: 2012-08-10T15:59:22Z

Expand Down Expand Up @@ -257386,15 +257393,20 @@ is_a: GO:0051701 ! biological process involved in interaction with host

[Term]
id: GO:0044418
name: translocation of DNA into host
name: obsolete translocation of DNA into host
namespace: biological_process
alt_id: GO:0051837
def: "The directed movement of DNA from an organism to a location inside its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:cc]
def: "OBSOLETE. The directed movement of DNA from an organism to a location inside its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:cc]
comment: This term was obsoleted because it was redundant with other terms.
synonym: "translocation of DNA into other organism during symbiotic interaction" BROAD [GOC:tb]
synonym: "translocation of DNA into other organism involved in symbiotic interaction" BROAD []
synonym: "transport of DNA into host" EXACT []
synonym: "transport of DNA into other organism during symbiotic interaction" BROAD []
is_a: GO:0044417 ! translocation of molecules into host
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI
is_obsolete: true
consider: GO:0075506
consider: GO:0075507
consider: GO:0075508

[Term]
id: GO:0044419
Expand Down Expand Up @@ -281518,7 +281530,8 @@ synonym: "intronless viral mRNA export from host nucleus" RELATED []
synonym: "intronless viral mRNA export out of nucleus" EXACT []
synonym: "intronless viral mRNA transport from nucleus to cytoplasm" EXACT []
synonym: "intronless viral mRNA-nucleus export" EXACT []
is_a: GO:0044417 ! translocation of molecules into host
is_a: GO:0016032 ! viral process
relationship: part_of GO:0019080 ! viral gene expression

[Term]
id: GO:0046785
Expand Down Expand Up @@ -332122,8 +332135,7 @@ name: modulation of nutrient release by host
namespace: biological_process
def: "Any process in which an organism modulates the frequency, rate or extent of the release of nutrients from its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:mtg_pamgo_17jul06]
synonym: "modulation by symbiont of nutrient release from host" EXACT []
is_a: GO:0044003 ! symbiont-mediated perturbation of host process
relationship: part_of GO:0044002 ! acquisition of nutrients from host
is_a: GO:0044002 ! acquisition of nutrients from host

[Term]
id: GO:0052092
Expand Down Expand Up @@ -425073,7 +425085,8 @@ name: degradation of host chromosome by virus
namespace: biological_process
def: "The catabolic breakdown of the DNA of a host chromosome by a virus. This occurs during infection of bacteria by some phages. It frees up a large pool of nucleoside 5'-triphophates for use in viral DNA synthesis." [PMID:163355, PMID:335083, PMID:3972821, PMID:5263754, VZ:3947]
xref: VZ:3947
is_a: GO:0039637 ! catabolism by virus of host DNA
is_a: GO:0016032 ! viral process
relationship: part_of GO:0039693 ! viral DNA genome replication

[Term]
id: GO:0099016
Expand Down Expand Up @@ -531062,14 +531075,17 @@ creation_date: 2014-11-24T13:38:34Z

[Term]
id: GO:1903652
name: modulation by virus of host cytoplasmic transport
name: obsolete modulation by virus of host cytoplasmic transport
namespace: biological_process
def: "Modulation by an infecting virus of host cytoplasmic transport." [GO_REF:0000063, GOC:TermGenie, PMID:25049409]
def: "OBSOLETE. Modulation by an infecting virus of host cytoplasmic transport." [GO_REF:0000063, GOC:TermGenie, PMID:25049409]
comment: This term was obsoleted because it represents the same process as symbiont-mediated perturbation of host intracellular transport ; GO:0052038.
synonym: "regulation by virus of host cytoplasmic streaming" EXACT []
synonym: "regulation by virus of host cytoplasmic transport" EXACT []
synonym: "viral modulation of host cytoplasmic trafficking" EXACT []
is_a: GO:0019054 ! modulation by virus of host cellular process
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26386" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI
is_obsolete: true
replaced_by: GO:0052038
created_by: jl
creation_date: 2014-11-24T17:22:04Z

Expand Down

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