Review annotations to GO:0006266 DNA ligation and descendants

[raymond91125]

Dear all,

The proposal has been made to obsolete
GO:0006266 DNA ligation
GO:1902972 premeiotic DNA replication DNA ligation
GO:1902973 mitotic DNA replication DNA ligation
GO:1902327 bacterial-type DNA replication DNA ligation
GO:1902333 nuclear DNA replication DNA ligation
GO:1904877 positive regulation of DNA ligase activity
GO:1904875 regulation of DNA ligase activity
GO:1902291 cell cycle DNA replication DNA ligation
GO:0051103 DNA ligation involved in DNA repair
GO:0051104 DNA-dependent DNA replication DNA ligation
GO:0051102 DNA ligation involved in DNA recombination
GO:0051107 negative regulation of DNA ligation
GO:0051105 regulation of DNA ligation
GO:0051106 positive regulation of DNA ligation
GO:0006288 base-excision repair, DNA ligation

see geneontology/go-ontology#29219

Experimental annotations that need to be reviewed are here:
https://docs.google.com/spreadsheets/d/1bz2A6JHNwf12jQuq7WjaOQJq-vElVDqpzU1bjKvl5k8/edit?gid=0#gid=0

Impacted groups:
BHF-UCL 3 DONE
EcoCyc 5 DONE
MGI 8
MTBBASE 3 DONE
PINC 2 DONE
RGD 2 DONE
Reactome 2 DONE
SGD 4 DONE
TAIR 1 DONE
UniProt 15 DONE
CACAO 1

** Group contacts: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

Mappings that need to be reviewed: (InterPro2GO, UniProt-Keywords, UniRule)
InterPro:IPR016306 DNA ligase, bacteriophage T7-type > GO:DNA ligation ; GO:0006266
InterPro:IPR029710 DNA ligase 4 > GO:DNA ligation involved in DNA repair ; GO:0051103

Thanks.

[RLovering]

I can't access the google document, please add me [email protected]

[deustp01]

Reactome is checked / patched.

[amandamackie]

EcoCyc done

[RLovering]

UCL done

[tberardini]

TAIR done

[slaulederkind]

RGD finished

[Antonialock]

MTBBASE
PINC
UniProt

done

[sarach06]

Hi,
Thank you very much. I have removed the terms from the InterPro entries mentioned above. This will be visible in InterPro 104.0.
Best regards,
Sara