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Reports at https://github.com/geneontology/go-annotation/tree/master/…
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…reports/5538 for issue #5538
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@raymond91125
raymond91125 authored and github-actions[bot] committed Nov 19, 2024
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1 change: 1 addition & 0 deletions ...6288-GO_0051102-GO_0051103-GO_0051104-GO_0051105-GO_0051106-GO_0051107-GO_1902291_etc.tsv
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assigned_by bioentity bioentity_label reference qualifier annotation_class annotation_class_label evidence_type evidence_with bioentity_isoform panther_family date annotation_extension_class taxon
46 changes: 46 additions & 0 deletions ...6288-GO_0051102-GO_0051103-GO_0051104-GO_0051105-GO_0051106-GO_0051107-GO_1902291_etc.tsv
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assigned_by bioentity bioentity_label reference qualifier annotation_class annotation_class_label evidence_type evidence_with bioentity_isoform panther_family date annotation_extension_class taxon
BHF-UCL UniProtKB:P49916 LIG3 PMID:7565692 GO:0006266 DNA ligation IDA UniProtKB:P49916-3 PANTHER:PTHR45674 20141212 NCBITaxon:9606
EcoCyc UniProtKB:P25772 ligB PMID:11812821 GO:0006266 DNA ligation IDA PANTHER:PTHR47810 20080513 NCBITaxon:83333
EcoCyc UniProtKB:P15042 ligA PMID:5341057 GO:0006266 DNA ligation IDA PANTHER:PTHR23389 20130620 NCBITaxon:83333
EcoCyc UniProtKB:P15042 ligA PMID:5341238 GO:0006266 DNA ligation IDA PANTHER:PTHR23389 20130620 NCBITaxon:83333
MGI MGI:MGI:1335098 Lig4 PMID:15194694 GO:0006266 DNA ligation IDA PANTHER:PTHR45997 20080129 NCBITaxon:10090
MGI MGI:MGI:1333799 Xrcc4 PMID:15194694 GO:0006266 DNA ligation IDA PANTHER:PTHR28559 20080129 NCBITaxon:10090
MGI MGI:MGI:1335098 Lig4 PMID:15968270 GO:0006266 DNA ligation IMP MGI:MGI:1857732 PANTHER:PTHR45997 20080204 CL:0000057 NCBITaxon:10090
MGI MGI:MGI:1913658 Aptx PMID:16964241 GO:0006266 DNA ligation IDA PANTHER:PTHR12486 20070307 NCBITaxon:10090
MTBBASE UniProtKB:P9WNV1 ligA PMID:12696044 GO:0006266 DNA ligation IMP PANTHER:PTHR23389 20100615 NCBITaxon:83332
MTBBASE UniProtKB:P9WNV5 ligB PMID:14985346 GO:0006266 DNA ligation IDA PANTHER:PTHR45674 20110725 NCBITaxon:83332
MTBBASE UniProtKB:P9WNV1 ligA PMID:14985346 GO:0006266 DNA ligation IDA PANTHER:PTHR23389 20110725 NCBITaxon:83332
PINC UniProtKB:P16455 MGMT PMID:2188979 GO:0006266 DNA ligation TAS UniProtKB:P16455 PANTHER:PTHR46460 20030904 NCBITaxon:9606
PINC UniProtKB:P12956 XRCC6 PMID:9826654 GO:0006266 DNA ligation TAS UniProtKB:P12956 PANTHER:PTHR12604 20030904 NCBITaxon:9606
RGD RGD:1304639 Lig4 PMID:9600082|RGD:1601271 GO:0006266 DNA ligation IDA PANTHER:PTHR45997 20070412 NCBITaxon:10116
Reactome UniProtKB:P18858 LIG1 Reactome:R-HSA-174456 GO:0006266 DNA ligation TAS UniProtKB:P18858 PANTHER:PTHR45674 20240525 NCBITaxon:9606
SGD SGD:S000002323 CDC9 PMID:9759502 GO:0006266 DNA ligation IMP UniProtKB:P04819 PANTHER:PTHR45674 20130807 NCBITaxon:559292
SGD SGD:S000002323 CDC9 PMID:9759502 GO:0006266 DNA ligation IDA UniProtKB:P04819 PANTHER:PTHR45674 20130807 NCBITaxon:559292
TAIR AGI_LocusCode:AT1G80420 ATXRCC1 PMID:23316050|TAIR:Publication:501753335 GO:0006266 DNA ligation IMP TAIR:locus:2198973 20130308 NCBITaxon:3702
UniProt UniProtKB:P49917 LIG4 PMID:12517771 GO:0006266 DNA ligation IDA UniProtKB:P49917 PANTHER:PTHR45997 20070808 NCBITaxon:9606
UniProt UniProtKB:P11388 TOP2A PMID:15491148 GO:0006266 DNA ligation IDA UniProtKB:P11388 PANTHER:PTHR10169 20060823 NCBITaxon:9606
UniProt UniProtKB:P9WNV3 ligD PMID:16476729 GO:0006266 DNA ligation IDA PANTHER:PTHR42705 20180511 NCBITaxon:83332
BHF-UCL UniProtKB:P49916 LIG3 PMID:19589734 GO:0006288 base-excision repair, DNA ligation IDA UniProtKB:P49916 PANTHER:PTHR45674 20141126 NCBITaxon:9606
BHF-UCL UniProtKB:P49916 LIG3 PMID:24674627 GO:0006288 base-excision repair, DNA ligation IMP UniProtKB:P49916-1 PANTHER:PTHR45674 20141212 GO:0005739 NCBITaxon:9606
EcoCyc UniProtKB:P15042 ligA PMID:23630273 GO:0006288 base-excision repair, DNA ligation IDA PANTHER:PTHR23389 20130620 NCBITaxon:83333
RGD RGD:1309875 Lig3 PMID:17412650|RGD:2302580 GO:0006288 base-excision repair, DNA ligation IDA PANTHER:PTHR45674 20100416 NCBITaxon:10116
Reactome UniProtKB:P49916 LIG3 Reactome:R-HSA-73931 GO:0006288 base-excision repair, DNA ligation TAS UniProtKB:P49916 PANTHER:PTHR45674 20240525 NCBITaxon:9606
MGI MGI:MGI:1335098 Lig4 PMID:9823897 GO:0051102 DNA ligation involved in DNA recombination IMP MGI:MGI:1857732 PANTHER:PTHR45997 20070410 NCBITaxon:10090
EcoCyc UniProtKB:P25772 ligB PMID:28700629 GO:0051103 DNA ligation involved in DNA repair IMP PANTHER:PTHR47810 20170821 NCBITaxon:83333
MGI MGI:MGI:1335098 Lig4 PMID:9823897 GO:0051103 DNA ligation involved in DNA repair IMP MGI:MGI:1857732 PANTHER:PTHR45997 20070410 NCBITaxon:10090
UniProt UniProtKB:Q13426 XRCC4 PMID:12517771 GO:0051103 DNA ligation involved in DNA repair IDA UniProtKB:Q13426 PANTHER:PTHR28559 20071026 NCBITaxon:9606
UniProt UniProtKB:P49917 LIG4 PMID:12517771 GO:0051103 DNA ligation involved in DNA repair IDA UniProtKB:P49917 PANTHER:PTHR45997 20071026 NCBITaxon:9606
UniProt UniProtKB:Q13426 XRCC4 PMID:15385968 GO:0051103 DNA ligation involved in DNA repair IDA UniProtKB:Q13426 PANTHER:PTHR28559 20210503 NCBITaxon:9606
UniProt UniProtKB:Q96T60 PNKP PMID:15385968 GO:0051103 DNA ligation involved in DNA repair IDA UniProtKB:Q96T60 PANTHER:PTHR12083 20210503 NCBITaxon:9606
UniProt UniProtKB:Q13426 XRCC4 PMID:17290226 GO:0051103 DNA ligation involved in DNA repair IDA UniProtKB:Q13426 PANTHER:PTHR28559 20210503 NCBITaxon:9606
UniProt UniProtKB:P49917 LIG4 PMID:17290226 GO:0051103 DNA ligation involved in DNA repair IDA UniProtKB:P49917 PANTHER:PTHR45997 20210503 NCBITaxon:9606
UniProt UniProtKB:Q9H9Q4 NHEJ1 PMID:19056826 GO:0051103 DNA ligation involved in DNA repair IDA UniProtKB:Q9H9Q4 PANTHER:PTHR32235 20210503 NCBITaxon:9606
UniProt UniProtKB:Q13426 XRCC4 PMID:28453785 GO:0051103 DNA ligation involved in DNA repair IDA UniProtKB:Q13426 PANTHER:PTHR28559 20210503 NCBITaxon:9606
MGI UniProtKB:Q8IW19 APLF PMID:21211721 GO:0051106 positive regulation of DNA ligation IGI UniProtKB:Q9Y6F1 UniProtKB:Q8IW19 PANTHER:PTHR21315 20131119 NCBITaxon:9606
MGI UniProtKB:Q9Y6F1 PARP3 PMID:21211721 GO:0051106 positive regulation of DNA ligation IGI UniProtKB:Q8IW19 UniProtKB:Q9Y6F1 PANTHER:PTHR10459 20131119 NCBITaxon:9606
UniProt RGD:2802 Hmgb1 PMID:10866811|RGD:10449519 GO:0051106 positive regulation of DNA ligation IDA PANTHER:PTHR48112 20151217 NCBITaxon:10116
UniProt UniProtKB:O32504 pprA PMID:15458422 GO:0051106 positive regulation of DNA ligation IDA 20100513 NCBITaxon:243230
UniProt UniProtKB:Q06609 RAD51 PMID:8929543 GO:0051106 positive regulation of DNA ligation IDA UniProtKB:Q06609 PANTHER:PTHR22942 20040805 NCBITaxon:9606
CACAO UniProtKB:P12682 HMGB1 PMID:9600082 GO:1904877 positive regulation of DNA ligase activity IDA UniProtKB:P12682 PANTHER:PTHR48112 20160202 NCBITaxon:9823
SGD SGD:S000004255 NEJ1 PMID:21149442 GO:1904877 positive regulation of DNA ligase activity IDA UniProtKB:Q06148 PANTHER:PTHR32235 20210824 GO:0006303|GO:0032807 NCBITaxon:559292
UniProt UniProtKB:P18887 XRCC1 PMID:28002403 GO:1904877 positive regulation of DNA ligase activity IMP UniProtKB:P18887 PANTHER:PTHR11370 20170525 NCBITaxon:9606
2 changes: 2 additions & 0 deletions ...6288-GO_0051102-GO_0051103-GO_0051104-GO_0051105-GO_0051106-GO_0051107-GO_1902291_etc.tsv
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assigned_by bioentity bioentity_label reference qualifier annotation_class annotation_class_label evidence_type evidence_with bioentity_isoform panther_family date annotation_extension_class taxon
SGD SGD:S000004255 NEJ1 PMID:21149442 GO:0045027 DNA end binding IDA UniProtKB:Q06148 PANTHER:PTHR32235 20210824 GO:1904877|GO:0006303|GO:0035861 NCBITaxon:559292
3 changes: 3 additions & 0 deletions ...6288-GO_0051102-GO_0051103-GO_0051104-GO_0051105-GO_0051106-GO_0051107-GO_1902291_etc.tsv
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GO:0006266 interpro2go InterPro:IPR016306 DNA ligase, bacteriophage T7-type > GO:DNA ligation ; GO:0006266
GO:0051103 interpro2go InterPro:IPR029710 DNA ligase 4 > GO:DNA ligation involved in DNA repair ; GO:0051103

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