add command; for #5348

geneontology · Jul 12, 2024 · 613764e · 613764e
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commit 613764e
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diff --git a/.github/workflows/report-direct-ann-term.yml b/.github/workflows/report-direct-ann-term.yml
@@ -33,7 +33,7 @@ jobs:
       - name: Run mapping hit script
         env:
           NUMBER: ${{ github.event.issue.number }}
-        run: mkdir -p reports/$NUMBER && wget --recursive --no-parent http://snapshot.geneontology.org/ontology/external2go/ && rm -f snapshot.geneontology.org/ontology/external2go/README.md snapshot.geneontology.org/ontology/external2go/index.html snapshot.geneontology.org/ontology/external2go/pfam2go snapshot.geneontology.org/ontology/external2go/pirsf2go snapshot.geneontology.org/ontology/external2go/prints2go snapshot.geneontology.org/ontology/external2go/prodom2go snapshot.geneontology.org/ontology/external2go/prosite2go snapshot.geneontology.org/ontology/external2go/smart2go && python3 ./scripts/mapping-report.py geneontology/go-annotation 7 --number $NUMBER --label direct_ann_to_list_of_terms --input ./snapshot.geneontology.org/ontology/external2go/ --output ./reports/$NUMBER --verbose && rm -f snapshot.geneontology.org/ontology/external2go/*2go && rmdir snapshot.geneontology.org/ontology/external2go && snapshot.geneontology.org/ontology && snapshot.geneontology.org
+        run: mkdir -p reports/$NUMBER && wget --recursive --no-parent http://snapshot.geneontology.org/ontology/external2go/ && rm -f snapshot.geneontology.org/ontology/external2go/README.md snapshot.geneontology.org/ontology/external2go/index.html snapshot.geneontology.org/ontology/external2go/pfam2go snapshot.geneontology.org/ontology/external2go/pirsf2go snapshot.geneontology.org/ontology/external2go/prints2go snapshot.geneontology.org/ontology/external2go/prodom2go snapshot.geneontology.org/ontology/external2go/prosite2go snapshot.geneontology.org/ontology/external2go/smart2go && python3 ./scripts/mapping-report.py geneontology/go-annotation 7 --number $NUMBER --label direct_ann_to_list_of_terms --input ./snapshot.geneontology.org/ontology/external2go/ --output ./reports/$NUMBER --verbose && rm -f snapshot.geneontology.org/ontology/external2go/*2go && rmdir snapshot.geneontology.org/ontology/external2go && rmdir snapshot.geneontology.org/ontology && rmdir snapshot.geneontology.org
       - name: Commit reports back to main
         uses: stefanzweifel/git-auto-commit-action@v4
         with:

diff --git a/.github/workflows/report-regulates-ann-term.yml b/.github/workflows/report-regulates-ann-term.yml
@@ -33,7 +33,7 @@ jobs:
       - name: Run mapping hit script
         env:
           NUMBER: ${{ github.event.issue.number }}
-        run: mkdir -p reports/$NUMBER && wget --recursive --no-parent http://snapshot.geneontology.org/ontology/external2go/ && rm -f snapshot.geneontology.org/ontology/external2go/README.md snapshot.geneontology.org/ontology/external2go/index.html snapshot.geneontology.org/ontology/external2go/pfam2go snapshot.geneontology.org/ontology/external2go/pirsf2go snapshot.geneontology.org/ontology/external2go/prints2go snapshot.geneontology.org/ontology/external2go/prodom2go snapshot.geneontology.org/ontology/external2go/prosite2go snapshot.geneontology.org/ontology/external2go/smart2go && python3 ./scripts/mapping-report.py geneontology/go-annotation 7 --number $NUMBER --label reg_ann_to_list_of_terms --input ./snapshot.geneontology.org/ontology/external2go/ --output ./reports/$NUMBER --verbose && rm -f snapshot.geneontology.org/ontology/external2go/*2go && rmdir snapshot.geneontology.org/ontology/external2go && snapshot.geneontology.org/ontology && snapshot.geneontology.org
+        run: mkdir -p reports/$NUMBER && wget --recursive --no-parent http://snapshot.geneontology.org/ontology/external2go/ && rm -f snapshot.geneontology.org/ontology/external2go/README.md snapshot.geneontology.org/ontology/external2go/index.html snapshot.geneontology.org/ontology/external2go/pfam2go snapshot.geneontology.org/ontology/external2go/pirsf2go snapshot.geneontology.org/ontology/external2go/prints2go snapshot.geneontology.org/ontology/external2go/prodom2go snapshot.geneontology.org/ontology/external2go/prosite2go snapshot.geneontology.org/ontology/external2go/smart2go && python3 ./scripts/mapping-report.py geneontology/go-annotation 7 --number $NUMBER --label reg_ann_to_list_of_terms --input ./snapshot.geneontology.org/ontology/external2go/ --output ./reports/$NUMBER --verbose && rm -f snapshot.geneontology.org/ontology/external2go/*2go && rmdir snapshot.geneontology.org/ontology/external2go && rmdir snapshot.geneontology.org/ontology && rmdir snapshot.geneontology.org
       - name: Commit reports back to main
         uses: stefanzweifel/git-auto-commit-action@v4
         with: