docker

Dockerfile

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+# use the ubuntu base image
+FROM ubuntu:18.04
+
+MAINTAINER Tobias Rausch [email protected]
+
+# install packages
+RUN apt-get update && apt-get install -y \
+    autoconf \
+    build-essential \
+    cmake \
+    g++ \
+    gfortran \
+    git \
+    libcurl4-gnutls-dev \
+    hdf5-tools \
+    libboost-date-time-dev \
+    libboost-program-options-dev \
+    libboost-system-dev \
+    libboost-filesystem-dev \
+    libboost-iostreams-dev \
+    libbz2-dev \
+    libhdf5-dev \
+    libncurses-dev \
+    liblzma-dev \
+    zlib1g-dev \
+    && apt-get clean \
+    && rm -rf /var/lib/apt/lists/*
+
+# set environment
+ENV BOOST_ROOT /usr
+
+# install dicey
+RUN cd /opt \
+    && git clone --recursive https://github.com/gear-genomics/dicey.git \
+    && cd /opt/dicey/ \
+    && make STATIC=1 all \
+    && make install
+
+# Multi-stage build
+FROM alpine:latest
+RUN mkdir -p /opt/dicey/bin
+WORKDIR /opt/dicey/bin
+COPY --from=0 /opt/dicey/bin/dicey .
+
+# Workdir
+WORKDIR /root/
+
+# Add dicey to PATH
+ENV PATH="/opt/dicey/bin:${PATH}"
+
+# by default /bin/sh is executed
+CMD ["/bin/sh"]