Merge branch 'release/v1.9'

Changes.txt → CHANGELOG.md

@@ -1,37 +1,59 @@
-Changelog
-==========
-
-- 1.8: June 22, 2015
-    - Used 'codesign' to sign "Sequence Matrix.app" as this might prevent
-      it from being recognized on MacOS X systems.
-       - Thanks to Shiyu Phan for this suggestion!
-
-- 1.7.9 
-    - Turned off displaying 'N's in the display, as we don't re-export
-      those anyway.
-    - Fixed a bug in the Cluster tool reported by Michael Balke: single
-      species without conspecific sequences in the dataset were being
-      reported as 'Split'.
-
-- 1.7.8
-    - Added DOI to the citation for Sequence Matrix.
-
-- 1.7.7-dev4
-    - Naked Nexus now replaces all non-alphanumeric characters with underscores.
-
-- 1.7.7-dev3 
-    - Fixed a minor bug with clustering in which the "% of valid comparisons
-      above the threshold" number was always 0%.
-    - Fixed a bug in which multiple "Cluster" analyses in the same session
-      caused the ProgressDialog to never close, resulting in the program
-      getting "stuck" and a forced quit becoming necessary.
-
-- 1.7.7-dev2 
-    - Rewrote SpeciesDetails to remove the old, bug-ridden algorithm.
-      The new one will probably actually work.
-    - Added discrimination between "Split only", "Lumped/Split" and
-      "Lumped" for clusters in Cluster.
-
-- 1.7.6 (June 6, 2010)
-    - Added code to detect overlapping codonsets on input (#19).
-    - Fixed a bug relating to TNT files exported into directory (#55).
+# Changelog
+
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
+and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+## [Unreleased]
+
+## [v1.9]: May 14, 2021
+- Replaced Ant-based build process with Maven build.
+- Changed minimum Java version from 1.8 to 11.
+- Consolidated all shared code into TaxonDNA.Common.
+- Added memory information in the SequenceMatrix About dialog box.
+- Added Spotless for code style checking.
+
+- [v1.8.2]: April 17, 2020
+- Updated Java version from 1.5 to 1.8. No Mac application is available for this release, but I'll try to fix that in #70 before the next release. You can run the JAR file on macOS by opening the Terminal and running:
+
+- [v1.8.1]: April 17, 2020
+
+- [v1.8]: June 22, 2015
+    - Used 'codesign' to sign "Sequence Matrix.app" as this might prevent
+      it from being recognized on MacOS X systems.
+       - Thanks to Shiyu Phan for this suggestion!
+
+- 1.7.9 
+    - Turned off displaying 'N's in the display, as we don't re-export
+      those anyway.
+    - Fixed a bug in the Cluster tool reported by Michael Balke: single
+      species without conspecific sequences in the dataset were being
+      reported as 'Split'.
+
+- 1.7.8
+    - Added DOI to the citation for Sequence Matrix.
+
+- 1.7.7-dev4
+    - Naked Nexus now replaces all non-alphanumeric characters with underscores.
+
+- 1.7.7-dev3 
+    - Fixed a minor bug with clustering in which the "% of valid comparisons
+      above the threshold" number was always 0%.
+    - Fixed a bug in which multiple "Cluster" analyses in the same session
+      caused the ProgressDialog to never close, resulting in the program
+      getting "stuck" and a forced quit becoming necessary.
+
+- 1.7.7-dev2 
+    - Rewrote SpeciesDetails to remove the old, bug-ridden algorithm.
+      The new one will probably actually work.
+    - Added discrimination between "Split only", "Lumped/Split" and
+      "Lumped" for clusters in Cluster.
+
+- 1.7.6 (June 6, 2010)
+    - Added code to detect overlapping codonsets on input (#19).
+    - Fixed a bug relating to TNT files exported into directory (#55).
+
+[Unreleased]: https://github.com/gaurav/taxondna/compare/v1.9...HEAD
+[v1.9]: https://github.com/gaurav/taxondna/compare/v1.8.2...v1.9
+[v1.8.2]: https://github.com/gaurav/taxondna/compare/v1.8.1...v1.8.2
+[v1.8.1]: https://github.com/gaurav/taxondna/compare/v1.8...v1.8.1
+[1.8]: https://github.com/gaurav/taxondna/releases/tag/1.8

pom.xml

@@ -15,7 +15,7 @@
 
   <groupId>com.ggvaidya</groupId>
   <artifactId>TaxonDNA</artifactId>
-  <version>1.9-SNAPSHOT</version>
+  <version>1.9</version>
 
   <name>TaxonDNA</name>
   <description>Taxonomy-aware DNA sequence processing toolkit.</description>