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@hexylena
hexylena committed Jun 11, 2024
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44 changes: 22 additions & 22 deletions api/modules.json
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"video": "assembly/largegenome/tutorial"
},
{
"video": "metagenomics/metagenomics-assembly/tutorial"
"video": "microbiome/metagenomics-assembly/tutorial"
}
]
},
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"title": "Friday: Microbiome",
"trainings": [
{
"session": "metagenomics/mothur-miseq-sop-short"
"session": "microbiome/mothur-miseq-sop-short"
},
{
"session": "metagenomics/nanopore"
"session": "microbiome/nanopore"
}
]
}
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"title": "Taxonomic Profiling",
"trainings": [
{
"video": "metagenomics/introduction/slides"
"video": "microbiome/introduction/slides"
},
{
"video": "metagenomics/mothur-miseq-sop-short/tutorial"
"video": "microbiome/mothur-miseq-sop-short/tutorial"
},
{
"video": "metagenomics/taxonomic-profiling/tutorial"
"video": "microbiome/taxonomic-profiling/tutorial"
}
]
},
"assembly": {
"title": "Assembly",
"trainings": [
{
"video": "metagenomics/metagenomics-assembly/tutorial"
"video": "microbiome/metagenomics-assembly/tutorial"
}
]
},
"nanopore": {
"title": "Long-read microbiome sequencing",
"trainings": [
{
"video": "metagenomics/pathogen-detection-from-nanopore-foodborne-data/tutorial"
"video": "microbiome/pathogen-detection-from-nanopore-foodborne-data/tutorial"
},
{
"video": "metagenomics/beer-data-analysis/tutorial"
"video": "microbiome/beer-data-analysis/tutorial"
},
{
"video": "wetlab/miseq/demo"
},
{
"video": "metagenomics/clinical-applications"
"video": "microbiome/clinical-applications"
},
{
"video": "metagenomics/plasmid-metagenomics-nanopore/tutorial"
"video": "microbiome/plasmid-metagenomics-nanopore/tutorial"
}
]
},
"other": {
"title": "Transcriptomics & Proteomics",
"trainings": [
{
"video": "metagenomics/metatranscriptomics"
"video": "microbiome/metatranscriptomics"
},
{
"video": "proteomics/metaproteomics/tutorial"
Expand All @@ -923,13 +923,13 @@
"title": "Taxonomic Profiling",
"trainings": [
{
"video": "metagenomics/introduction/slides"
"video": "microbiome/introduction/slides"
},
{
"video": "metagenomics/mothur-miseq-sop-short/tutorial"
"video": "microbiome/mothur-miseq-sop-short/tutorial"
},
{
"video": "metagenomics/taxonomic-profiling/tutorial"
"video": "microbiome/taxonomic-profiling/tutorial"
}
]
},
Expand All @@ -940,30 +940,30 @@
"video": "wetlab/miseq/demo"
},
{
"video": "metagenomics/clinical-applications"
"video": "microbiome/clinical-applications"
},
{
"video": "metagenomics/plasmid-metagenomics-nanopore/tutorial"
"video": "microbiome/plasmid-metagenomics-nanopore/tutorial"
},
{
"video": "metagenomics/pathogen-detection-from-nanopore-foodborne-data/tutorial"
"video": "microbiome/pathogen-detection-from-nanopore-foodborne-data/tutorial"
},
{
"video": "metagenomics/beer-data-analysis/tutorial"
"video": "microbiome/beer-data-analysis/tutorial"
}
]
},
"other": {
"title": "Other",
"trainings": [
{
"video": "metagenomics/metagenomics-assembly/tutorial"
"video": "microbiome/metagenomics-assembly/tutorial"
},
{
"session": "variant-analysis/tb-variant-analysis"
},
{
"video": "metagenomics/metatranscriptomics"
"video": "microbiome/metatranscriptomics"
},
{
"video": "proteomics/metaproteomics/tutorial"
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"title": "Other trancriptomics tutorials",
"trainings": [
{
"video": "metagenomics/metatranscriptomics"
"video": "microbiome/metatranscriptomics"
}
]
}
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2 changes: 1 addition & 1 deletion api/modules/assembly.json
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"video": "assembly/largegenome/tutorial"
},
{
"video": "metagenomics/metagenomics-assembly/tutorial"
"video": "microbiome/metagenomics-assembly/tutorial"
}
]
},
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4 changes: 2 additions & 2 deletions api/modules/bioinformatics-buffet.json
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"title": "Friday: Microbiome",
"trainings": [
{
"session": "metagenomics/mothur-miseq-sop-short"
"session": "microbiome/mothur-miseq-sop-short"
},
{
"session": "metagenomics/nanopore"
"session": "microbiome/nanopore"
}
]
}
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18 changes: 9 additions & 9 deletions api/modules/meta-omics.json
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"title": "Taxonomic Profiling",
"trainings": [
{
"video": "metagenomics/introduction/slides"
"video": "microbiome/introduction/slides"
},
{
"video": "metagenomics/mothur-miseq-sop-short/tutorial"
"video": "microbiome/mothur-miseq-sop-short/tutorial"
},
{
"video": "metagenomics/taxonomic-profiling/tutorial"
"video": "microbiome/taxonomic-profiling/tutorial"
}
]
},
"assembly": {
"title": "Assembly",
"trainings": [
{
"video": "metagenomics/metagenomics-assembly/tutorial"
"video": "microbiome/metagenomics-assembly/tutorial"
}
]
},
"nanopore": {
"title": "Long-read microbiome sequencing",
"trainings": [
{
"video": "metagenomics/pathogen-detection-from-nanopore-foodborne-data/tutorial"
"video": "microbiome/pathogen-detection-from-nanopore-foodborne-data/tutorial"
},
{
"video": "metagenomics/beer-data-analysis/tutorial"
"video": "microbiome/beer-data-analysis/tutorial"
},
{
"video": "wetlab/miseq/demo"
},
{
"video": "metagenomics/clinical-applications"
"video": "microbiome/clinical-applications"
},
{
"video": "metagenomics/plasmid-metagenomics-nanopore/tutorial"
"video": "microbiome/plasmid-metagenomics-nanopore/tutorial"
}
]
},
"other": {
"title": "Transcriptomics & Proteomics",
"trainings": [
{
"video": "metagenomics/metatranscriptomics"
"video": "microbiome/metatranscriptomics"
},
{
"video": "proteomics/metaproteomics/tutorial"
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18 changes: 9 additions & 9 deletions api/modules/microbial.json
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"title": "Taxonomic Profiling",
"trainings": [
{
"video": "metagenomics/introduction/slides"
"video": "microbiome/introduction/slides"
},
{
"video": "metagenomics/mothur-miseq-sop-short/tutorial"
"video": "microbiome/mothur-miseq-sop-short/tutorial"
},
{
"video": "metagenomics/taxonomic-profiling/tutorial"
"video": "microbiome/taxonomic-profiling/tutorial"
}
]
},
Expand All @@ -23,30 +23,30 @@
"video": "wetlab/miseq/demo"
},
{
"video": "metagenomics/clinical-applications"
"video": "microbiome/clinical-applications"
},
{
"video": "metagenomics/plasmid-metagenomics-nanopore/tutorial"
"video": "microbiome/plasmid-metagenomics-nanopore/tutorial"
},
{
"video": "metagenomics/pathogen-detection-from-nanopore-foodborne-data/tutorial"
"video": "microbiome/pathogen-detection-from-nanopore-foodborne-data/tutorial"
},
{
"video": "metagenomics/beer-data-analysis/tutorial"
"video": "microbiome/beer-data-analysis/tutorial"
}
]
},
"other": {
"title": "Other",
"trainings": [
{
"video": "metagenomics/metagenomics-assembly/tutorial"
"video": "microbiome/metagenomics-assembly/tutorial"
},
{
"session": "variant-analysis/tb-variant-analysis"
},
{
"video": "metagenomics/metatranscriptomics"
"video": "microbiome/metatranscriptomics"
},
{
"video": "proteomics/metaproteomics/tutorial"
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2 changes: 1 addition & 1 deletion api/modules/transcriptomics.json
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"title": "Other trancriptomics tutorials",
"trainings": [
{
"video": "metagenomics/metatranscriptomics"
"video": "microbiome/metatranscriptomics"
}
]
}
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17 changes: 17 additions & 0 deletions api/sessions.json
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Expand Up @@ -123,6 +123,23 @@
"proteomics/proteogenomics-novel-peptide-analysis/tutorial"
]
},
"microbiome/mothur-miseq-sop-short": {
"title": "16S taxonomic profiling",
"description": "To determine the composition of a microbiome sample, sequencing of the 16S rRNA gene\nis often used. This allows us to identify the bacterial species present in our sample.\nThis lecture and practical session introduces you to 16S analysis in Galaxy using the\nmothur tool suite.\n",
"videos": [
"microbiome/introduction/slides",
"microbiome/mothur-miseq-sop-short/tutorial"
]
},
"microbiome/nanopore": {
"title": "Microbiome Analysis using Nanopore Sequencing",
"description": "In this 3-part module, you will learn about Nanopore long-read sequencing for the\ndetection of antimicrobial resistance (AMR). There is a short video showing you the\nwetlab steps involved in using the MinION sequencer. A talk about the clinical applications,\nand finally a practical tutorial walking you through an AMR analysis in Galaxy.\n",
"videos": [
"wetlab/miseq/demo",
"microbiome/clinical-applications",
"microbiome/plasmid-metagenomics-nanopore/tutorial"
]
},
"statistics/deeplearning": {
"title": "Deep Learning Demystified",
"description": "This 3-part session will introduce you to the world of deep learning and cover Feedforward\nNeural Networks (FNN), Recurrent Neural Networks (FNN), and Convolutional Neural Networks\n(CNN).\n",
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4 changes: 4 additions & 0 deletions events.html
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