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Pick out datasets with decent metadata #230

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20 changes: 20 additions & 0 deletions genomics/4-Variation/updates/illumina_artic_accessions.tsv
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run_accession study_accession
ERR4238187 PRJEB38723
ERR4238188 PRJEB38723
ERR4238189 PRJEB38723
ERR4238190 PRJEB38723
ERR4238191 PRJEB38723
ERR4238193 PRJEB38723
ERR4238194 PRJEB38723
ERR4238196 PRJEB38723
ERR4238197 PRJEB38723
ERR4238198 PRJEB38723
ERR4238199 PRJEB38723
ERR4238200 PRJEB38723
ERR4238201 PRJEB38723
ERR4238202 PRJEB38723
ERR4238203 PRJEB38723
ERR4238205 PRJEB38723
ERR4238207 PRJEB38723
ERR4238208 PRJEB38723
ERR4238209 PRJEB38723
94 changes: 94 additions & 0 deletions genomics/4-Variation/updates/illumina_metagenomic_accessions.tsv
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run_accession study_accession
ERR4450774 PRJEB39761
ERR4452719 PRJEB39761
ERR4452734 PRJEB39761
ERR4452736 PRJEB39761
ERR4452737 PRJEB39761
ERR4452738 PRJEB39761
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ERR4452740 PRJEB39761
ERR4452741 PRJEB39761
ERR4452742 PRJEB39761
ERR4452743 PRJEB39761
ERR4452744 PRJEB39761
ERR4452745 PRJEB39761
ERR4452746 PRJEB39761
ERR4452747 PRJEB39761
ERR4452748 PRJEB39761
ERR4452749 PRJEB39761
ERR4452751 PRJEB39761
ERR4452752 PRJEB39761
ERR4452753 PRJEB39761
ERR4452754 PRJEB39761
ERR4452755 PRJEB39761
ERR4452756 PRJEB39761
ERR4452757 PRJEB39761
ERR4452758 PRJEB39761
ERR4452759 PRJEB39761
ERR4452760 PRJEB39761
ERR4452762 PRJEB39761
ERR4452763 PRJEB39761
ERR4452764 PRJEB39761
ERR4452765 PRJEB39761
ERR4452766 PRJEB39761
ERR4452767 PRJEB39761
ERR4452768 PRJEB39761
ERR4452769 PRJEB39761
ERR4452770 PRJEB39761
ERR4452771 PRJEB39761
ERR4452772 PRJEB39761
ERR4452773 PRJEB39761
ERR4452774 PRJEB39761
ERR4452775 PRJEB39761
ERR4452776 PRJEB39761
ERR4452779 PRJEB39761
ERR4452780 PRJEB39761
ERR4452781 PRJEB39761
ERR4452783 PRJEB39761
ERR4452784 PRJEB39761
ERR4452785 PRJEB39761
SRR11961362 PRJNA638211
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SRR11961364 PRJNA638211
SRR11961365 PRJNA638211
SRR11961366 PRJNA638211
SRR11961367 PRJNA638211
SRR11961368 PRJNA638211
SRR11961369 PRJNA638211
SRR11961370 PRJNA638211
SRR11961371 PRJNA638211
SRR12008186 PRJNA631061
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SRR12008188 PRJNA631061
SRR12133951 PRJNA643574
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SRR12192422 PRJNA631061
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SRR12192424 PRJNA631061
SRR12192425 PRJNA631061
SRR12192426 PRJNA631061
SRR12192427 PRJNA631061
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SRR12192430 PRJNA631061
SRR12192431 PRJNA631061
SRR12192432 PRJNA631061
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SRR12192434 PRJNA631061
SRR12192435 PRJNA631061
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SRR12192444 PRJNA631061
SRR12192445 PRJNA631061
SRR12192446 PRJNA631061
6,917 changes: 6,917 additions & 0 deletions genomics/4-Variation/updates/metadata_stats_with_benchmark_accessions.ipynb

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235 changes: 235 additions & 0 deletions genomics/4-Variation/updates/nanopore_artic_accessions.tsv
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run_accession study_accession
SRR12336747 PRJNA649101
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33 changes: 33 additions & 0 deletions genomics/4-Variation/updates/nanopore_metagenomic_accessions.tsv
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run_accession study_accession
SRR11140745 PRJNA607948
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