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fulcrumgenomics / fgpyo Public

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Add a function for determining read pair orientation#201

Merged

clintval merged 13 commits intomainfulcrumgenomics/fgpyo:mainfrom cv_properly_pairedfulcrumgenomics/fgpyo:cv_properly_pairedCopy head branch name to clipboard

Dec 27, 2024

+340-4

Conversation Commits13 (13)Checks Files changed

Commits

Commits on Dec 24, 2024

Add a function for determining read pair orientation
clintval
committed
chore: remove a newline
clintval
committed
docs: tweak an arg description
clintval
committed
docs: make hyperlinks for makedocs
clintval
committed

Commits on Dec 27, 2024

chore: update name of fn to is_properly_paired
clintval
committed
chore: update name of fn to is_proper_pair
clintval
committed
chore: change param names
clintval
committed
chore: make arg more generically typed
clintval
committed
feat: only grab the mate cigar if absolutely necessary
clintval
committed
chore: ensure 100% test coverage on diff
clintval
committed
chore: remove reference to R2
clintval
committed
Merge remote-tracking branch 'origin/main' into cv_properly_paired
clintval
committed
Update fgpyo/sam/__init__.py

clintval
and
tfenne
authored

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