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fulcrumgenomics / fgbio Public

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Bug Fix - SamRecordClipper.numBasesExtendingPastMate#937

Open

JoeVieira wants to merge 8 commits intofulcrumgenomics:mainfulcrumgenomics/fgbio:mainfrom molecularloop:joe_fixClippermolecularloop/fgbio:joe_fixClipperCopy head branch name to clipboard

+200-137

Conversation Commits8 (8)Checks Files changed

Commits

Commits on Sep 15, 2023

Allow clip past mate to run first
JoeVieira
committed
initial testing adjustments
JoeVieira
committed
initial testing adjustments
JoeVieira
committed
additional test conditions
JoeVieira
committed

Commits on Sep 20, 2023

Refactor convenience methods and remove to force explicit passing of mate end, mate start. depending on MC tag when doing operations on the mate allows for data inconsistency.
JoeVieira
committed
tests to cover clipPastEnd usage & validate bug fix.
JoeVieira
committed
revert previous commit, no need for user order.
JoeVieira
committed
update test name
JoeVieira
committed

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