Output new-lines when printing stuff to the command window.

francopestilli · Nov 19, 2013 · 2b7d58a · 2b7d58a
1 parent f37bdb5
commit 2b7d58a
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Showing 3 changed files with 8 additions and 8 deletions.
diff --git a/fileFilters/nifti/niftiCheckQto.m b/fileFilters/nifti/niftiCheckQto.m
@@ -34,13 +34,13 @@
     % sanity-check ni.dim
     sz = size(ni.data);
     if(any(ni.dim(1:3)~=sz(1:3)))
-        fprintf('[%s] NIFTI volume dim wrong- setting it to the actual data size.',mfilename);
+        fprintf('[%s] NIFTI volume dim wrong- setting it to the actual data size.\n',mfilename);
         ni.dim(1:3) = sz(1:3);
     end
 end
 
 if(ni.qform_code==0 && ni.sform_code~=0)
-    fprintf('[%s] ni.qform_code is zero and sform_code ~=0. Setting ni.qto_* from ni.sto_*...',mfilename);
+    fprintf('[%s] ni.qform_code is zero and sform_code ~=0. Setting ni.qto_* from ni.sto_*...\n',mfilename);
     ni = niftiSetQto(ni, ni.sto_xyz);
 end
 

diff --git a/mrBOLD/GetSet/Nifti/niftiSet.m b/mrBOLD/GetSet/Nifti/niftiSet.m
@@ -17,13 +17,13 @@
         dim = niftiGet(ni,'dim');
 
         if(any(dim(1:3)~=sz(1:3)))
-            warning('[%s] NIFTI volume dim wrong- setting it to the actual data size.',mfilename);
+            warning('[%s] NIFTI volume dim wrong- setting it to the actual data size.\n',mfilename);
             dim(1:3) = sz(1:3);
             ni = niftiSet(ni,'dim',dim);
         end
 
         if(ni.qform_code==0 && ni.sform_code~=0)
-            warning('[%s] ni.qform_code is zero and sform_code ~=0. Setting ni.qto_* from ni.sto_*...',mfilename);
+            warning('[%s] ni.qform_code is zero and sform_code ~=0. Setting ni.qto_* from ni.sto_*...\n',mfilename);
             %ni = niftiSetQto(ni, ni.sto_xyz);
             ni = niftiSet(ni,'qto',niftiGet(ni,'sto_xyz'));
         end
@@ -34,9 +34,10 @@
         if(any(origin<2)||any(origin>dim(1:3)-2))
             [~,r,s,k] = affineDecompose(niftiGet(ni, 'qto_ijk'));
             t = ni.dim/2;
-            warning('[%s] Qto matrix defines an origin very far away from the isocenter.\n',mfilename);
-            warning('[%s] This implies that the Qto matrix may be bad - please check qto_ijk. An automatic fix will be attempted.\n',mfilename);
-            warning('[%s] Origin to the image center is at [%2.3f,%2.3f,%2.3f] pix.\n',mfilename,t(1),t(2),t(3));
+            warning_string = [sprintf('[%s] Qto matrix defines an origin very far away from the isocenter.\n',mfilename),...
+                              sprintf('This implies that the Qto matrix may be bad - please check qto_ijk. An automatic fix will be attempted.\n'),...
+                              sprintf('Origin to the image center is at [%2.3f,%2.3f,%2.3f] pix.\n',t(1),t(2),t(3))];
+            warning(warning_string);
             %ni = niftiSetQto(ni, inv(affineBuild(t,r,s,k)));
             ni = niftiSet(ni,'qto',inv(affineBuild(t,r,s,k)));
 

diff --git a/mrScripts/anatomy/s_alignInplaneToAnatomical.m b/mrScripts/anatomy/s_alignInplaneToAnatomical.m
@@ -69,7 +69,6 @@
 % (if you need help with the shortcut keys:) 
 % doc defineellipse3d 
 [~,mn,sd] = defineellipse3d(refpre);
-close all
 %% 4c Automatic alignment (coarse)
 useMI = true;  % you need MI if the two volumes have different tissue contrast.
                % it's much faster to not use MI.