Fix output path [GEAR-440] (#5)

* remove extension from output path
* add release drafter
* update manifest version, cleanup

.github/release-drafter.yml

@@ -0,0 +1,32 @@
+name-template: 'v$NEXT_PATCH_VERSION'
+tag-template: 'v$NEXT_PATCH_VERSION'
+categories:
+  - title: 'Features'
+    labels:
+      - 'feature'
+      - 'enhancement'
+      - 'enh'
+  - title: 'Fixes'
+    labels:
+      - 'fix'
+      - 'bugfix'
+      - 'bug'
+  - title: 'Documentation'
+    labels:
+      - 'doc'
+      - 'documentation'
+  - title: 'Maintenance'
+    labels:
+      - 'chore'
+      - 'maintenance'
+change-template: '- $TITLE @$AUTHOR (#$NUMBER)'
+template: |
+  _[ADD SUMMARY OF WHAT CHANGED]_
+
+  # What's Changed
+
+  $CHANGES
+
+  # Impact On Gear Output
+
+  _[LIST HOW STRUCTURE AND/OR VALUES OF GEAR OUTPUTS (e.g. FILES AND METADATA) ARE IMPACTED]_

.github/workflows/release-drafter.yml

@@ -0,0 +1,16 @@
+name: Release Drafter
+
+on:
+  push:
+    # branches to consider in the event; optional, defaults to all
+    branches:
+      - master
+
+jobs:
+  update_release_draft:
+    runs-on: ubuntu-latest
+    steps:
+      # Drafts your next Release notes as Pull Requests are merged into "master"
+      - uses: release-drafter/release-drafter@v5
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

manifest.json

@@ -8,13 +8,12 @@
   "license": "Other",
   "source": "https://github.com/flywheel-apps/fsl-anat",
   "url": "https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/fsl_anat",
-  "version": "1.1.1_6.0.1",
+  "version": "1.1.2_6.0.1",
   "custom": {
     "gear-builder": {
       "category": "analysis",
-      "image": "flywheel/fsl-anat:1.1.1_6.0.1"
+      "image": "flywheel/fsl-anat:1.1.2_6.0.1"
     },
-    "docker-image": "flywheel/fsl-anat:1.1.1_6.0.1",
     "flywheel": {
       "suite": "FSL"
     }

utils/args.py

@@ -29,7 +29,11 @@ def build(context):
     input_file_basename =   re.sub('[^0-9a-zA-Z./]+', '_',
                             context.get_input("Image")['location']['name']
                         )
-    context.custom_dict['input_file_basename']=input_file_basename
+    if input_file_basename.endswith('.nii.gz'):
+        input_file_basename = input_file_basename.replace('.nii.gz', '')
+    if input_file_basename.endswith('.nii'):
+        input_file_basename = input_file_basename.replace('.nii', '')
+    context.custom_dict['input_file_basename'] = input_file_basename
     result_dir = input_file_basename + '_result'
     context.custom_dict['result_dir']=result_dir
     params['o'] = op.join(context.work_dir, result_dir)