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updage links, etc
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magland committed Feb 18, 2025
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2 changes: 2 additions & 0 deletions .clinerules
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Expand Up @@ -59,3 +59,5 @@ When asked to do something, first take a look around the project by reading as m
When asked to make a python script to explore something, make a .py file with a notebook style using "# %%" markers. Make some meaningful cells to be executed. Be sure to include a "# %%" on the first line before the imports.

This repo is at https://github.com/flatironinstitute/neurosift

After completing any task, ask the user if they want you to update the changelog, and if so, edit CHANGELOG.md accordingly.
1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -3,6 +3,7 @@
## February 18, 2025
- Added support for hide=1 query parameter
- Migration to v2 deployed
- Added external website links to DANDI and OpenNeuro browser pages

## February 17, 2025
- Added SNIRF file support with HDF5 viewer integration
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2 changes: 1 addition & 1 deletion README.md
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@@ -1,6 +1,6 @@
# neurosift (v2)

Neurosift is a browser-based tool designed for the visualization of neuroscience data with a focus on NWB (Neurodata Without Borders) filesy, and enables interactive exploration of the [DANDI Archive](https://dandiarchive.org/) and [OpenNeuro](https://openneuro.org/) online repositories.
Neurosift is a browser-based tool designed for the visualization of neuroscience data with a focus on NWB (Neurodata Without Borders) files, and enables interactive exploration of the [DANDI Archive](https://dandiarchive.org/) and [OpenNeuro](https://openneuro.org/) online repositories.

This branch contains the new (v2) version of neurosift. The previous (v1) version is available on the [main branch](https://github.com/flatironinstitute/neurosift/tree/main).

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14 changes: 10 additions & 4 deletions src/pages/DandiPage/DandiPage.tsx
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Expand Up @@ -8,7 +8,9 @@ import {
Stack,
FormControlLabel,
Switch,
Link,
} from "@mui/material";
import LaunchIcon from "@mui/icons-material/Launch";
import SearchIcon from "@mui/icons-material/Search";
import HistoryIcon from "@mui/icons-material/History";
import DandisetSearchResult from "./DandisetSearchResult";
Expand Down Expand Up @@ -117,10 +119,14 @@ const DandiPage: FunctionComponent<DandiPageProps> = ({ width, height }) => {
<Typography variant="h4" component="h1" gutterBottom>
DANDI Archive Browser
</Typography>
<Typography variant="body1" sx={{ mb: 1 }}>
Browse and visualize datasets from the DANDI neuroscience data
archive.
</Typography>
<Box sx={{ mb: 2 }}>
<Link
href="https://dandiarchive.org/"
sx={{ display: "flex", alignItems: "center", gap: 0.5 }}
>
Visit DANDI Archive website <LaunchIcon sx={{ fontSize: 16 }} />
</Link>
</Box>
{recentDandisets.length > 0 && (
<Box sx={{ mb: 0.5 }}>
<Stack direction="row" spacing={1} alignItems="center">
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10 changes: 5 additions & 5 deletions src/pages/HomePage/HomePage.tsx
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Expand Up @@ -17,13 +17,13 @@ const HomePage: FunctionComponent<HomePageProps> = ({ width, height }) => {
<Container maxWidth="md" sx={{ mt: 4 }}>
<Box sx={{ mb: 4 }}>
<Typography variant="h4" component="h1" gutterBottom>
Welcome to Neurosift (v2)
Welcome to Neurosift
</Typography>
<Typography variant="body1" sx={{ mb: 3 }}>
Neurosift is a browser-based tool designed for the visualization and
processing of NWB (Neurodata Without Borders) files, whether stored
locally or hosted remotely, and enables interactive exploration and
analysis of the online repositories such as DANDI Archive.
Neurosift is a browser-based tool designed for the visualization of
neuroscience data with a focus on NWB (Neurodata Without Borders)
files, and enables interactive exploration of the DANDI Archive and
OpenNeuro online repositories.
</Typography>
</Box>

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14 changes: 10 additions & 4 deletions src/pages/OpenNeuroPage/OpenNeuroPage.tsx
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Expand Up @@ -6,7 +6,9 @@ import {
Button,
Chip,
Stack,
Link,
} from "@mui/material";
import LaunchIcon from "@mui/icons-material/Launch";
import SearchIcon from "@mui/icons-material/Search";
import HistoryIcon from "@mui/icons-material/History";
import { FunctionComponent, useCallback, useEffect, useState } from "react";
Expand Down Expand Up @@ -196,10 +198,14 @@ const OpenNeuroPage: FunctionComponent<OpenNeuroPageProps> = ({
<Typography variant="h4" component="h1" gutterBottom>
OpenNeuro Browser
</Typography>
<Typography variant="body1" sx={{ mb: 1 }}>
Browse and visualize datasets from OpenNeuro, an open platform for
sharing neuroimaging data.
</Typography>
<Box sx={{ mb: 2 }}>
<Link
href="https://openneuro.org/"
sx={{ display: "flex", alignItems: "center", gap: 0.5 }}
>
Visit OpenNeuro website <LaunchIcon sx={{ fontSize: 16 }} />
</Link>
</Box>
{recentDatasets.length > 0 && (
<Box sx={{ mb: 0.5 }}>
<Stack direction="row" spacing={1} alignItems="center">
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