Merge pull request #36 from fhdsl/add-links-to-modules

add links to biodigs activities

09-module_list.Rmd

@@ -0,0 +1,20 @@
+# (PART\*) Classroom Modules {-}
+
+
+```{r, include = FALSE}
+ottrpal::set_knitr_image_path()
+```
+
+# R Programming Language
+
+Here are the currently available modules for using the BioDIGS data with the R programming language. These can be done in RStudio or the R console.
+
+[Exploring Soil Data](https://hutchdatascience.org/GDSCN_BioDIGS_Soil/): explore the abiotic soil characteristics using the tidyverse in R
+
+# Galaxy
+
+Here are the currently available modules for using the BioDIGS data with Galaxy.
+
+Antimicrobial Resistance: examine microbial data for evidence of antimicrobial resistance genes using ABRIcate on Galaxy. COMING SOON!!
+
+Biosynthetic Gene Clusters: identify biosynthetic gene clusters in microbiome data using antiSMASH on Galaxy. COMING SOON!!

_bookdown.yml

@@ -12,7 +12,7 @@ rmd_files: ["index.Rmd",
             "08-student_anvil_guide.Rmd",
             "08-student_using_rstudio.Rmd",
             "08-student_using_galaxy.Rmd",
-            "09-data_exploration.Rmd",
+            "09-module_list.Rmd",
             "About.Rmd",
             "References.Rmd"]
 new_session: yes

resources/dictionary.txt

@@ -1,7 +1,10 @@
 abiotic
+ABRicate
 AGBT
+ahoffma
 al
 Annandale
+antiSMASH
 AnVIL
 Audiographer
 Audiography
@@ -12,6 +15,8 @@ BioDIGS
 BioDIGSData
 BioDiversity
 bioinformatics
+biosynthetic
+Biosynthetic
 BIPOC
 Bloomberg
 bookdown
@@ -45,6 +50,7 @@ doi
 Doña
 dplyr
 dropdown
+ehumphri
 El
 enforceability
 et
@@ -55,6 +61,7 @@ faq
 FHDaSL
 Firstname
 FirstName
+fredhutch
 Funder
 GDSCN
 Generis
@@ -97,6 +104,7 @@ mentorship
 meq
 metagenomics
 Metagenomics
+microbiome
 Muschelli
 na
 Nanopore