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added video overview of galaxy for students
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ehumph committed Feb 5, 2024
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Expand Up @@ -88,6 +88,16 @@ In the first box, give your Workspace clone a name by adding an underscore (“_
ottrpal::include_slide("https://docs.google.com/presentation/d/182AOzMaiyrreinnsRX2VhH7YsVgvAp4xtIB_7Mzmk6I/edit#slide=id.ged15532ded_0_648")
```

## Video overview on using Galaxy

```{r, echo = FALSE, results='asis'}
cow::borrow_chapter(
doc_path = "child/_child_galaxy_video.Rmd",
repo_name = "jhudsl/AnVIL_Template"
)
```


## Starting Galaxy {#starting-galaxy}

Galaxy is a free, relatively easy to use bioinformatics implementation package. It changes command line programs into GUI based programs and is a great tool for performing bioinformatics analysis without having to update software or worry too much about coding. In order to use Galaxy, we need to create a cloud environment. This is like quickly renting a few computers from Google as the engine to power our Galaxy analysis.
Expand Down Expand Up @@ -147,3 +157,13 @@ ottrpal::include_slide("https://docs.google.com/presentation/d/182AOzMaiyrreinns
```

On the welcome page, there are links to tutorials. You may try these out on your own. If you want to try a new analysis this is a good place to start.

## Deleting Galaxy

```{r, echo = FALSE, results='asis'}
cow::borrow_chapter(
doc_path = "child/_child_galaxy_delete.Rmd",
repo_name = "jhudsl/AnVIL_Template"
)
```

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