Merge branch 'main' of https://github.com/fhdsl/Ethical_Data_Handling…

…_for_Cancer_Research into main

docs/01-intro.md

@@ -27,7 +27,7 @@ This course is intended for researchers (including postdocs and students) with l
 
 The course will cover  key underlying principles and concepts in ethical data handling. 
 
-<img src="resources/images/01-intro_files/figure-html//1SRokLaGAc2hiwJSN26FHE0ZEEhPr3KQdyMICic8kAcs_gf5f8818810_1_5.png" title="Overall Course Learning Objectives. This course will demonstrate how to: 1.Recognize and work with data that requires extra privacy protection, 2.Implement best practices for data security, 3.Share data safely and securely in a variety of contexts, 4. Apply ethical consideration in data management workflows" alt="Overall Course Learning Objectives. This course will demonstrate how to: 1.Recognize and work with data that requires extra privacy protection, 2.Implement best practices for data security, 3.Share data safely and securely in a variety of contexts, 4. Apply ethical consideration in data management workflows" width="100%" style="display: block; margin: auto;" />
+<img src="resources/images/01-intro_files/figure-html//1SRokLaGAc2hiwJSN26FHE0ZEEhPr3KQdyMICic8kAcs_gf5f8818810_1_5.png" title="Overall Course Learning Objectives. This course will demonstrate how to: 1.Recognize and work with data that requires extra privacy protection, 2.Implement best practices for data security, 3.Share data safely and securely in a variety of contexts, 4. Apply ethical consideration in data management workflows, 5. Recognize current ethical concerns regarding data for research" alt="Overall Course Learning Objectives. This course will demonstrate how to: 1.Recognize and work with data that requires extra privacy protection, 2.Implement best practices for data security, 3.Share data safely and securely in a variety of contexts, 4. Apply ethical consideration in data management workflows, 5. Recognize current ethical concerns regarding data for research" width="100%" style="display: block; margin: auto;" />
 
 It will also cover how best practices for data security, data privacy, and data sharing are critical for responsible data management.
 

docs/04-Data_Sharing.md

@@ -6,7 +6,7 @@
 
 In this chapter we will discuss the importance of data sharing, best practices for data sharing, places where you can store your data, as well as methods to share data in contexts in which you might have thought sharing was not possible! 
 
-<img src="resources/images/04-Data_Sharing_files/figure-html//1SRokLaGAc2hiwJSN26FHE0ZEEhPr3KQdyMICic8kAcs_gcfd3d3081e_2_1.png" title="Learning Objectives: 1.Define the term data security, 2. Describe major data security strategies, 3.Explain the basics of how encryption works, 4.Be aware of how data security practices may or may not be a part of your workflow" alt="Learning Objectives: 1.Define the term data security, 2. Describe major data security strategies, 3.Explain the basics of how encryption works, 4.Be aware of how data security practices may or may not be a part of your workflow" width="100%" style="display: block; margin: auto;" />
+<img src="resources/images/04-Data_Sharing_files/figure-html//1SRokLaGAc2hiwJSN26FHE0ZEEhPr3KQdyMICic8kAcs_gcfd3d3081e_2_1.png" title="Learning Objectives: 1.Describe the importance of data sharing, 2.Identify best practices for data sharing, 3.List places where you can store your data, 4. Describe methods to share data in contexts in which you might have thought sharing was not possible" alt="Learning Objectives: 1.Describe the importance of data sharing, 2.Identify best practices for data sharing, 3.List places where you can store your data, 4. Describe methods to share data in contexts in which you might have thought sharing was not possible" width="100%" style="display: block; margin: auto;" />
 
 ## Data sharing is important!
 

docs/404.html

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docs/About.md

@@ -55,7 +55,7 @@ These credits are based on our [course contributors table guidelines](https://gi
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docs/about-the-authors.html

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docs/current-data-concerns.html

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docs/data-ethics.html

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docs/data-privacy.html

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docs/data-security.html

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docs/data-sharing.html

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@@ -285,7 +285,7 @@ <h1>
 <div id="data-sharing" class="section level1" number="4">
 <h1><span class="header-section-number">Chapter 4</span> Data Sharing</h1>
 <p>In this chapter we will discuss the importance of data sharing, best practices for data sharing, places where you can store your data, as well as methods to share data in contexts in which you might have thought sharing was not possible!</p>
-<p><img src="resources/images/04-Data_Sharing_files/figure-html/1SRokLaGAc2hiwJSN26FHE0ZEEhPr3KQdyMICic8kAcs_gcfd3d3081e_2_1.png" title="Learning Objectives: 1.Define the term data security, 2. Describe major data security strategies, 3.Explain the basics of how encryption works, 4.Be aware of how data security practices may or may not be a part of your workflow" alt="Learning Objectives: 1.Define the term data security, 2. Describe major data security strategies, 3.Explain the basics of how encryption works, 4.Be aware of how data security practices may or may not be a part of your workflow" width="100%" style="display: block; margin: auto;" /></p>
+<p><img src="resources/images/04-Data_Sharing_files/figure-html/1SRokLaGAc2hiwJSN26FHE0ZEEhPr3KQdyMICic8kAcs_gcfd3d3081e_2_1.png" title="Learning Objectives: 1.Describe the importance of data sharing, 2.Identify best practices for data sharing, 3.List places where you can store your data, 4. Describe methods to share data in contexts in which you might have thought sharing was not possible" alt="Learning Objectives: 1.Describe the importance of data sharing, 2.Identify best practices for data sharing, 3.List places where you can store your data, 4. Describe methods to share data in contexts in which you might have thought sharing was not possible" width="100%" style="display: block; margin: auto;" /></p>
 <div id="data-sharing-is-important" class="section level2" number="4.1">
 <h2><span class="header-section-number">4.1</span> Data sharing is important!</h2>
 <p>Sharing data is critical for optimizing the advancement of scientific understanding. Now that labs all over the world are producing massive amounts of data, there are many discoveries that can be made by just using this existing data.</p>

docs/index.html

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@@ -284,7 +284,7 @@ <h1>
 </div>
 <div id="header">
 <h1 class="title">Ethical Data Handling for Cancer Research</h1>
-<p class="date"><em>2023-09-12</em></p>
+<p class="date"><em>2024-06-18</em></p>
 </div>
 <div id="about-this-course" class="section level1 unnumbered">
 <h1>About this course</h1>

docs/index.md

@@ -1,6 +1,6 @@
 --- 
 title: "Ethical Data Handling for Cancer Research"
-date: "2023-09-12"
+date: "2024-06-18"
 site: bookdown::bookdown_site
 documentclass: book
 bibliography: [book.bib, packages.bib]

docs/introduction.html

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@@ -301,7 +301,7 @@ <h2><span class="header-section-number">1.3</span> Topics Covered</h2>
 <div id="curriculum" class="section level2" number="1.4">
 <h2><span class="header-section-number">1.4</span> Curriculum</h2>
 <p>The course will cover key underlying principles and concepts in ethical data handling.</p>
-<p><img src="resources/images/01-intro_files/figure-html/1SRokLaGAc2hiwJSN26FHE0ZEEhPr3KQdyMICic8kAcs_gf5f8818810_1_5.png" title="Overall Course Learning Objectives. This course will demonstrate how to: 1.Recognize and work with data that requires extra privacy protection, 2.Implement best practices for data security, 3.Share data safely and securely in a variety of contexts, 4. Apply ethical consideration in data management workflows" alt="Overall Course Learning Objectives. This course will demonstrate how to: 1.Recognize and work with data that requires extra privacy protection, 2.Implement best practices for data security, 3.Share data safely and securely in a variety of contexts, 4. Apply ethical consideration in data management workflows" width="100%" style="display: block; margin: auto;" /></p>
+<p><img src="resources/images/01-intro_files/figure-html/1SRokLaGAc2hiwJSN26FHE0ZEEhPr3KQdyMICic8kAcs_gf5f8818810_1_5.png" title="Overall Course Learning Objectives. This course will demonstrate how to: 1.Recognize and work with data that requires extra privacy protection, 2.Implement best practices for data security, 3.Share data safely and securely in a variety of contexts, 4. Apply ethical consideration in data management workflows, 5. Recognize current ethical concerns regarding data for research" alt="Overall Course Learning Objectives. This course will demonstrate how to: 1.Recognize and work with data that requires extra privacy protection, 2.Implement best practices for data security, 3.Share data safely and securely in a variety of contexts, 4. Apply ethical consideration in data management workflows, 5. Recognize current ethical concerns regarding data for research" width="100%" style="display: block; margin: auto;" /></p>
 <p>It will also cover how best practices for data security, data privacy, and data sharing are critical for responsible data management.</p>
 <p><img src="resources/images/01-intro_files/figure-html/1SRokLaGAc2hiwJSN26FHE0ZEEhPr3KQdyMICic8kAcs_g11ef3a2f2bf_0_0.png" title="Ethical data practices include: Sharing data safely and openly to help further the research field. Keeping sensitive data private and hidden in order to protect patients from harm. Securing data so it is not exposed and cannot be manipulated or found by others who are not permitted to access it." alt="Ethical data practices include: Sharing data safely and openly to help further the research field. Keeping sensitive data private and hidden in order to protect patients from harm. Securing data so it is not exposed and cannot be manipulated or found by others who are not permitted to access it." width="100%" style="display: block; margin: auto;" /></p>
 

docs/no_toc/01-intro.md

@@ -27,7 +27,7 @@ This course is intended for researchers (including postdocs and students) with l
 
 The course will cover  key underlying principles and concepts in ethical data handling. 
 
-<img src="resources/images/01-intro_files/figure-html//1SRokLaGAc2hiwJSN26FHE0ZEEhPr3KQdyMICic8kAcs_gf5f8818810_1_5.png" title="Overall Course Learning Objectives. This course will demonstrate how to: 1.Recognize and work with data that requires extra privacy protection, 2.Implement best practices for data security, 3.Share data safely and securely in a variety of contexts, 4. Apply ethical consideration in data management workflows" alt="Overall Course Learning Objectives. This course will demonstrate how to: 1.Recognize and work with data that requires extra privacy protection, 2.Implement best practices for data security, 3.Share data safely and securely in a variety of contexts, 4. Apply ethical consideration in data management workflows" width="100%" style="display: block; margin: auto;" />
+<img src="resources/images/01-intro_files/figure-html//1SRokLaGAc2hiwJSN26FHE0ZEEhPr3KQdyMICic8kAcs_gf5f8818810_1_5.png" title="Overall Course Learning Objectives. This course will demonstrate how to: 1.Recognize and work with data that requires extra privacy protection, 2.Implement best practices for data security, 3.Share data safely and securely in a variety of contexts, 4. Apply ethical consideration in data management workflows, 5. Recognize current ethical concerns regarding data for research" alt="Overall Course Learning Objectives. This course will demonstrate how to: 1.Recognize and work with data that requires extra privacy protection, 2.Implement best practices for data security, 3.Share data safely and securely in a variety of contexts, 4. Apply ethical consideration in data management workflows, 5. Recognize current ethical concerns regarding data for research" width="100%" style="display: block; margin: auto;" />
 
 It will also cover how best practices for data security, data privacy, and data sharing are critical for responsible data management.
 

docs/no_toc/04-Data_Sharing.md

@@ -6,7 +6,7 @@
 
 In this chapter we will discuss the importance of data sharing, best practices for data sharing, places where you can store your data, as well as methods to share data in contexts in which you might have thought sharing was not possible! 
 
-<img src="resources/images/04-Data_Sharing_files/figure-html//1SRokLaGAc2hiwJSN26FHE0ZEEhPr3KQdyMICic8kAcs_gcfd3d3081e_2_1.png" title="Learning Objectives: 1.Define the term data security, 2. Describe major data security strategies, 3.Explain the basics of how encryption works, 4.Be aware of how data security practices may or may not be a part of your workflow" alt="Learning Objectives: 1.Define the term data security, 2. Describe major data security strategies, 3.Explain the basics of how encryption works, 4.Be aware of how data security practices may or may not be a part of your workflow" width="100%" style="display: block; margin: auto;" />
+<img src="resources/images/04-Data_Sharing_files/figure-html//1SRokLaGAc2hiwJSN26FHE0ZEEhPr3KQdyMICic8kAcs_gcfd3d3081e_2_1.png" title="Learning Objectives: 1.Describe the importance of data sharing, 2.Identify best practices for data sharing, 3.List places where you can store your data, 4. Describe methods to share data in contexts in which you might have thought sharing was not possible" alt="Learning Objectives: 1.Describe the importance of data sharing, 2.Identify best practices for data sharing, 3.List places where you can store your data, 4. Describe methods to share data in contexts in which you might have thought sharing was not possible" width="100%" style="display: block; margin: auto;" />
 
 ## Data sharing is important!
 

docs/no_toc/404.html

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docs/no_toc/About.md

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docs/no_toc/about-the-authors.html

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 ##  collate  en_US.UTF-8                 
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docs/no_toc/current-data-concerns.html

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docs/no_toc/data-ethics.html

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docs/no_toc/data-privacy.html

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docs/no_toc/data-security.html

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