fixes an issue where alignment trimming ended prematurely

fethalen · Apr 18, 2024 · d9e0163 · d9e0163
1 parent efd5617
commit d9e0163
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/alignmentconcatenation.jl b/src/alignmentconcatenation.jl
@@ -311,7 +311,7 @@ function maskalignment(
     alignmentend = last(anchors).seqpos
 
     for (position, letters) in enumerate(alignment)
-        position > alignmentend && break
+        # position > alignmentend && break
         (queryletter, refletter) = letters
         if ((!retainstops && queryletter == AA_Term) ||
             (!retainambiguous && isambiguous(queryletter)) ||