chore: remove console logs

public/imports.js

@@ -42,7 +42,6 @@ document.addEventListener('DOMContentLoaded', async function () {
         }
         if (allPresentInDom) {
           clearInterval(interval)
-          console.log("Finished loading html")
           resolve()
         } else {
           console.log('Nothing in DOM yet, waiting 100ms')

public/nav.js

@@ -4,7 +4,6 @@ import Swal from "sweetalert2";
 while (!window.htmlPagesAdded) {
   await new Promise((resolve) => setTimeout(resolve, 100))
 }
-console.log("Going for it")
 
 
 // this variable is here to keep track of when the Organize datasets/Continue button is enabled or disabled
@@ -82,7 +81,6 @@ const handleSectionTrigger = async (event) => {
   }
 
   if (sectionId === "guided_mode-section") {
-    console.log("IN this section")
     // Disallow the transition if an upload is in progress
     if (document.getElementById("returnButton") !== null) {
       Swal.fire({
@@ -226,10 +224,8 @@ const handleSectionTrigger = async (event) => {
   ];
 
   if (showSidebarSections.includes(sectionId)) {
-    console.log("Here?")
     forceActionSidebar("show");
   } else {
-    console.log("In elese statement")
     forceActionSidebar("hide");
   }
 
@@ -254,7 +250,6 @@ const handleSectionTrigger = async (event) => {
 };
 
 function showMainContent() {
-  console.log(document.querySelector(".js-nav").classList)
   document.querySelector(".js-nav").classList.add("is-shown");
   document.querySelector(".js-content").classList.add("is-shown");
 }

src/main/strain.js

@@ -8,7 +8,6 @@ ipcMain.handle("getStrainData", async (event, rridInfo) => {
     let data = ""; 
     let dataReady = false; 
     if (res.statusCode === 200) {
-      console.log("Status code is 200?")
       res.setEncoding("utf8");
       res.on("data", (d) => {
         data += d;
@@ -29,7 +28,6 @@ ipcMain.handle("getStrainData", async (event, rridInfo) => {
   })
 })
 
-  console.log("Data is", data)
 
 
   // let xmlSerializer = new XMLSerializer();

src/preload/index.js

@@ -17,9 +17,7 @@ fixPath();
 
 import "v8-compile-cache";
 
-console.log(log);
-console.log(log.transports);
-console.log(log.transports.file);
+
 log.initialize();
 
 // Custom APIs for renderer

src/preload/update-path-darwin.js

@@ -16,7 +16,6 @@ const fixPath = () => {
       window.process.env.PATH,
     ].join(":");
 
-    console.log("PATH updated to: " + window.process.env.PATH)
   }
 };
 

src/renderer/src/assets/imports.js

@@ -42,7 +42,6 @@ document.addEventListener('DOMContentLoaded', async function () {
         }
         if (allPresentInDom) {
           clearInterval(interval)
-          console.log("Finished loading html")
           resolve()
         } else {
           console.log('Nothing in DOM yet, waiting 100ms')

src/renderer/src/assets/nav.js

@@ -3,7 +3,6 @@ import Swal from "sweetalert2";
 while (!window.htmlPagesAdded) {
   await new Promise((resolve) => setTimeout(resolve, 100))
 }
-console.log("Going for it")
 
 
 // this variable is here to keep track of when the Organize datasets/Continue button is enabled or disabled
@@ -81,7 +80,6 @@ const handleSectionTrigger = async (event) => {
   }
 
   if (sectionId === "guided_mode-section") {
-    console.log("IN this section")
     // Disallow the transition if an upload is in progress
     if (document.getElementById("returnButton") !== null) {
       Swal.fire({
@@ -225,10 +223,8 @@ const handleSectionTrigger = async (event) => {
   ];
 
   if (showSidebarSections.includes(sectionId)) {
-    console.log("Here?")
     forceActionSidebar("show");
   } else {
-    console.log("In elese statement")
     forceActionSidebar("hide");
   }
 
@@ -253,7 +249,6 @@ const handleSectionTrigger = async (event) => {
 };
 
 function showMainContent() {
-  console.log(document.querySelector(".js-nav").classList)
   document.querySelector(".js-nav").classList.add("is-shown");
   document.querySelector(".js-content").classList.add("is-shown");
 }

src/renderer/src/scripts/globals.js

@@ -1365,7 +1365,6 @@ window.openDropdownPrompt = async (ev, dropdown, show_timer = true) => {
           }
 
           let result = responseObject.data.datasets;
-          console.log("Dataset results: ", result)
           window.datasetList = [];
           window.datasetList = result;
           window.refreshDatasetList();
@@ -1701,7 +1700,6 @@ window.openDropdownPrompt = async (ev, dropdown, show_timer = true) => {
         },
       });
 
-      console.log(result)
 
       if (result) {
         await window.openDropdownPrompt(this, "bf");

src/renderer/src/scripts/guided-mode/guided-curate-dataset.js

@@ -3259,7 +3259,6 @@ const generateProgressCardElement = (progressFileJSONObj) => {
 };
 
 const guidedRenderProgressCards = async () => {
-  console.log("Loading the render progress cards func");
   const progressCardsContainer = document.getElementById("guided-container-progress-cards");
   const progressCardLoadingDiv = document.getElementById("guided-section-loading-progress-cards");
 
@@ -3429,7 +3428,6 @@ window.guidedOpenManifestEditSwal = async (highLevelFolderName) => {
 
   //upon receiving a reply of the spreadsheet, handle accordingly
   window.electron.ipcRenderer.on("spreadsheet-reply", async (event, result) => {
-    console.log("Spreadsheet reply from guided curate");
     if (!result || result === "") {
       window.electron.ipcRenderer.removeAllListeners("spreadsheet-reply");
       return;
@@ -3936,7 +3934,6 @@ const setActiveProgressionTab = (targetPageID) => {
   let targetProgressionTab = $(`#${targetProgressionTabID}`);
   targetProgressionTab.addClass("selected-tab");
 };
-console.log(window.api);
 let homeDir = await window.electron.ipcRenderer.invoke("get-app-path", "home");
 let guidedProgressFilePath = window.path.join(homeDir, "SODA", "Guided-Progress");
 
@@ -4834,17 +4831,14 @@ const updateGuidedRadioButtonsFromJSON = (parentPageID) => {
 };
 
 const guidedAddUsersAndTeamsToDropdown = (usersArray, teamsArray) => {
-  console.log("HERE?");
   const guidedUsersAndTeamsDropdown = document.getElementById("guided_bf_list_users_and_teams");
   // Reset the dropdown
   guidedUsersAndTeamsDropdown.innerHTML =
     "<option>Select individuals or teams to grant permissions to</option>";
 
-  console.log(usersArray);
 
   // Loop through the users and add them to the dropdown
   for (const userString of usersArray) {
-    console.log(userString);
     const userNameAndEmail = userString.split("!|**|!")[0].trim();
     const userID = userString.split("!|**|!")[1].trim();
     const userOption = `
@@ -5037,7 +5031,6 @@ const handleNextButtonVisibility = (targetPageID) => {
 // //If the keys exist, extract the data from the window.sodaJSONObj and populate the page
 // //If the keys do not exist, reset the page (inputs, tables etc.) to the default state
 window.openPage = async (targetPageID) => {
-  console.log("TargetPageID is: ", targetPageID);
   //NOTE: 2 Bottom back buttons (one handles sub pages, and the other handles main pages)
   //Back buttons should be disabled and the function setLoading should be (set as false?)
 
@@ -6076,10 +6069,8 @@ window.openPage = async (targetPageID) => {
             //Banner is returned as an s3 bucket url but image needs to be converted as
             //base64 to save and write to users local system
 
-            console.log(res);
 
             let img_base64 = await window.getBase64(res); // encode image to base64
-            console.log("Not failing hehjasfhjk");
             let guided_img_url = res;
             let imageType = "";
             let fullBase64Image = "";
@@ -6152,7 +6143,6 @@ window.openPage = async (targetPageID) => {
           }
           window.sodaJSONObj["pages-fetched-from-pennsieve"].push("guided-banner-image-tab");
         } catch (error) {
-          console.log("Failure is here");
           clientError(error);
           const emessage = userErrorMessage(error);
           await guidedShowOptionalRetrySwal(emessage, "guided-banner-image-tab");
@@ -9425,7 +9415,6 @@ window.openGuidedAddContributorSwal = async () => {
     confirmButtonText: "Add contributor",
     confirmButtonColor: "#3085d6 !important",
     willOpen: () => {
-      console.log("Loading up the add contributor modal. ON wil open");
       //Create Affiliation(s) tagify for each contributor
       const contributorAffiliationInput = document.getElementById(
         "guided-contributor-affiliation-input"
@@ -9740,7 +9729,6 @@ const renderDatasetDescriptionContributorsTable = () => {
 };
 
 const addContributorField = () => {
-  console.log("Adding contributor");
   const contributorsContainer = document.getElementById("contributors-container");
   //create a new div to hold contributor fields
   const newContributorField = document.createElement("div");
@@ -10839,7 +10827,6 @@ window.specifyPool = (event, poolNameInput) => {
           setActiveSubPage("guided-organize-subjects-into-pools-page");
           return;
         } else {
-          console.log("Pools here?");
           //Add left border back to subject dropdown cell to separate pool name and subject dropdown
           poolSubjectsDropdownCell.removeClass("remove-left-border");
 
@@ -12229,7 +12216,6 @@ const createPennsievePermissionsTableRowElement = (entityType, name, permission,
   }
 };
 const renderPermissionsTable = () => {
-  console.log("Rendering permissions table?");
   // when rendering permissions we will need to check if the permission was fetched from pennsieve
   // we will then create a different table element that will behave differently
   // visually showing user that the permission will be deleted upon upload
@@ -12500,7 +12486,6 @@ const setGuidedDatasetPiOwner = (newPiOwnerObj) => {
 };
 
 const guidedAddUserPermission = (newUserPermissionObj) => {
-  console.log("Adding user permissions");
   //If an existing user with the same ID already exists, update the existing user's position
   for (userPermission of window.sodaJSONObj["digital-metadata"]["user-permissions"]) {
     if (
@@ -13076,7 +13061,6 @@ document.getElementById("button-homepage-guided-mode").addEventListener("click",
   attachGuidedMethodsToSodaJSONObj();
   guidedTransitionFromHome();
 
-  console.log("About to unlock sidebar");
   guidedUnLockSideBar();
 
   guidedUnSkipPage("guided-select-starting-point-tab");
@@ -13094,7 +13078,6 @@ document.querySelector("#button-homepage-freeform-mode").addEventListener("click
 });
 
 $("#guided-button-add-permission-user-or-team").on("click", function () {
-  console.log("Here finally");
   try {
     //get the selected permission element
     const newPermissionElement = $("#guided_bf_list_users_and_teams option:selected");
@@ -13681,7 +13664,6 @@ $("#guided-input-destination-getting-started-locally").on("click", () => {
 });
 
 const guidedCreateOrRenameDataset = async (bfAccount, datasetName) => {
-  console.log("That is the dataset name: ", datasetName);
   document.getElementById("guided-dataset-name-upload-tr").classList.remove("hidden");
   const datasetNameUploadText = document.getElementById("guided-dataset-name-upload-text");
 
@@ -14574,7 +14556,6 @@ window.electron.ipcRenderer.on(
       // Remove unnecessary key from sodaJSONObjCopy since we don't need to
       // check if the account details are valid during local generation
       delete sodaJSONObjCopy["bf-account-selected"];
-      console.log("making post request to /curate_datasets/curation");
 
       updateDatasetUploadProgressTable("local", {
         "Current action": `Preparing dataset for local generation`,
@@ -14601,7 +14582,6 @@ window.electron.ipcRenderer.on(
             const { data } = response;
             const main_curate_progress_message = data["main_curate_progress_message"];
             if (main_curate_progress_message === "Success: COMPLETED!") {
-              console.log("Done with generation");
               break; // Exit the loop when generation is done
             }
             const elapsed_time_formatted = data["elapsed_time_formatted"];
@@ -14646,10 +14626,7 @@ window.electron.ipcRenderer.on(
       updateDatasetUploadProgressTable("local", {
         "Current action": `Generating metadata files`,
       });
-      console.log(
-        "Subjects path: ",
-        window.path.join(filePath, guidedDatasetName, "subjects.xlsx")
-      );
+
       // Generate all dataset metadata files
       await guidedGenerateSubjectsMetadata(
         window.path.join(filePath, guidedDatasetName, "subjects.xlsx")
@@ -14992,10 +14969,7 @@ const guidedGenerateDatasetDescriptionMetadata = async (destination) => {
     );
   }
 
-  console.log("guidedDatasetInformation", guidedDatasetInformation);
-  console.log("guidedStudyInformation", guidedStudyInformation);
-  console.log("guidedContributorInformation", guidedContributorInformation);
-  console.log("datasetLinks", datasetLinks);
+
   try {
     await client.post(
       `/prepare_metadata/dataset_description_file`,
@@ -16128,7 +16102,6 @@ $("#guided-generate-changes-file").on("click", () => {
 });
 
 $("#guided-generate-dataset-button").on("click", async function () {
-  console.log("Generating for GM");
   // Ensure that the current workspace is the workspace the user confirmed
   const currentWorkspace = guidedGetCurrentUserWorkSpace();
   const datasetWorkspace = window.sodaJSONObj["digital-metadata"]["dataset-workspace"];
@@ -16217,7 +16190,6 @@ $("#guided-generate-dataset-button").on("click", async function () {
 });
 
 const guidedSaveBannerImage = async () => {
-  console.log("Wowawhoo");
   $("#guided-para-dataset-banner-image-status").html("Please wait...");
   //Save cropped image locally and check size
   let imageFolder = path.join(homeDirectory, "SODA", "guided-banner-images");

src/renderer/src/scripts/manage-dataset/manage-dataset.js

@@ -1656,7 +1656,6 @@ const showDatasetDescription = async () => {
 };
 
 window.getBase64 = async (url) => {
-  console.log("THe url passed down will be: ", url)
   return await window.electron.ipcRenderer.invoke("get-string-representation-of-buffer", url, "binary")
 };
 
@@ -2034,7 +2033,6 @@ const uploadBannerImage = async () => {
     } else {
       //final size is greater than 5mb so compress image here (image already created and stored in temp file)
       let scaledImagePath = await window.scaleBannerImage(imagePath); //scaled image will be in temp folder
-      console.log("Scaled image path value: ", scaledImagePath)
       let image_file_size = window.fs.fileSizeSync(scaledImagePath); //update size for analytics
       try {
         let uploadBannerImage = await client.put(

src/renderer/src/scripts/metadata-files/datasetDescription.js

@@ -1283,7 +1283,6 @@ window.edit_current_con_id = (ev) => {
 
 const memorizeAffiliationInfo = (values) => {
   window.createMetadataDir();
-  console.log("affiliationConfigPath", window.affiliationConfigPath)
   var content = window.parseJson(window.affiliationConfigPath);
   content["affiliation"] = values;
   window.fs.writeFileSync(window.affiliationConfigPath, JSON.stringify(content));

src/renderer/src/scripts/metadata-files/downloadTemplates.js

@@ -26,9 +26,7 @@ let templateArray = [
 const downloadTemplates = async (templateItem, destinationFolder) => {
   let currentDirectory = await window.electron.ipcRenderer.invoke("get-current-directory");
   let templatePath = window.path.join(currentDirectory, "..", "renderer", "file_templates", templateItem);
-  console.log(templatePath)
   let destinationPath = window.path.join(destinationFolder, templateItem);
-  console.log(destinationPath)
 
   if (window.fs.existsSync(destinationPath)) {
     let emessage = "File '" + templateItem + "' already exists in " + destinationFolder;