Implementing polynomial basis #76
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* Removing `quad` submodule and simplifying some jaxprs (#46) * remove quad, simplify jaxprs * adding zero-safe sqrt function * Adding tutorials (#35) * adding initial autodiff tutorial * updating tutorial dependencies * fixing autodiff tutorial * updating gitignore file to ignore __pycache__ directories * [pre-commit.ci] pre-commit autoupdate (#47) updates: - [github.com/charliermarsh/ruff-pre-commit: v0.0.270 → v0.0.272](astral-sh/ruff-pre-commit@v0.0.270...v0.0.272) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * adding transit tutorial notebook * additional minor changes to transit tutorial notebook * updating transit fitting tutorial notebook * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * [pre-commit.ci] pre-commit autoupdate (#50) updates: - https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit - [github.com/astral-sh/ruff-pre-commit: v0.0.272 → v0.0.276](astral-sh/ruff-pre-commit@v0.0.272...v0.0.276) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump pypa/gh-action-pypi-publish from 1.8.6 to 1.8.7 (#51) Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.6 to 1.8.7. - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](pypa/gh-action-pypi-publish@v1.8.6...v1.8.7) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#52) updates: - [github.com/psf/black: 23.3.0 → 23.7.0](psf/black@23.3.0...23.7.0) - [github.com/astral-sh/ruff-pre-commit: v0.0.276 → v0.0.277](astral-sh/ruff-pre-commit@v0.0.276...v0.0.277) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#53) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.277 → v0.0.278](astral-sh/ruff-pre-commit@v0.0.277...v0.0.278) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#54) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.278 → v0.0.281](astral-sh/ruff-pre-commit@v0.0.278...v0.0.281) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * update transit tutorial * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * changing number of steps in chain * change mcmc steps * [pre-commit.ci] pre-commit autoupdate (#56) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.281 → v0.0.282](astral-sh/ruff-pre-commit@v0.0.281...v0.0.282) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#58) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.282 → v0.0.284](astral-sh/ruff-pre-commit@v0.0.282...v0.0.284) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#59) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.284 → v0.0.285](astral-sh/ruff-pre-commit@v0.0.284...v0.0.285) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Migrating to hatch instead of poetry for build backend (#60) * migrating to hatch for infra * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * lint * fewer tests * only one macos test * not hashable * nothing really * fixing deprecation warning * faster tests --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#62) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.285 → v0.0.286](astral-sh/ruff-pre-commit@v0.0.285...v0.0.286) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#64) updates: - [github.com/psf/black: 23.7.0 → 23.9.1](psf/black@23.7.0...23.9.1) - [github.com/astral-sh/ruff-pre-commit: v0.0.286 → v0.0.288](astral-sh/ruff-pre-commit@v0.0.286...v0.0.288) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#66) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.288 → v0.0.291](astral-sh/ruff-pre-commit@v0.0.288...v0.0.291) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Implement exposure time integration (#57) * adding initial autodiff tutorial * updating tutorial dependencies * fixing autodiff tutorial * updating gitignore file to ignore __pycache__ directories * adding transit tutorial notebook * additional minor changes to transit tutorial notebook * updating transit fitting tutorial notebook * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update transit tutorial * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * changing number of steps in chain * change mcmc steps * Doesn't work yet but adding changes for implementing exposure time integration * adding stencil_order variable to separate from order variable * storing cchanges (doesn't work yet) * changes made for implementing a working version of exposure time integration * adding documentation text for order keyword argument * changing order keyword to limbdark_order for clarity and updating docs * removing tutorial notebooks from this branch --------- Co-authored-by: Dan F-M <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump actions/checkout from 3 to 4 (#67) Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](actions/checkout@v3...v4) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#68) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.291 → v0.0.292](astral-sh/ruff-pre-commit@v0.0.291...v0.0.292) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#69) updates: - [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Alternative implementation for rotation matrices (#63) * adding initial port of starry wigner code * fixing bug in rotation.dotR * fixing implementation for u2 * removing one condition * adding some TODOs to me * slight refactor * one more todo * don't test with square matrices * adding simple implementation of cel integral at tests * skip some tests that are hard for x64 * adding closed form implementaion of low order solution vector * removing closed form solution vector... moved to new branch * handling normalization; moving symbolic test * better tolerance handling * handling edge cases * removing cel * push before checking out main branch * always ensure kite area is non-negative * Update .gitignore * Ensuring the square of the kite area calculation is non-negative (#73) * updating gitignore file to ignore __pycache__ directories * always ensure kite area is non-negative * Update .gitignore --------- Co-authored-by: Dan Foreman-Mackey <[email protected]> * Update the basis computations to use sparse linear algebra (#72) * using sparse linear algebra for the basis computations * rename A -> basis * Adding initial flux implementation * adding special case of rotation for just z axis * removing tensordot function * removing flux function from this PR * Introducing units and refactoring Keplerian orbit models (#61) * adding units * adding example of how we might use units * adding tests for quantity_input decorator * adding docstring to decorator * adding doctring and tests for field * adding tests for keplerian * fixing edge cases test * updating keplerian tests * adding units to TransitOrbit * fixing python 3.9 errors * remove pyright from pre-commit * less stringent test comparisons * test tol for soln * sketching OO interface * default central * improving interface for keplerian system * Implementing polynomial basis (#76) * [pre-commit.ci] pre-commit autoupdate (#78) * [pre-commit.ci] pre-commit autoupdate updates: - [github.com/psf/black: 23.9.1 → 23.10.1](psf/black@23.9.1...23.10.1) - [github.com/astral-sh/ruff-pre-commit: v0.0.292 → v0.1.3](astral-sh/ruff-pre-commit@v0.0.292...v0.1.3) * Upper limit on xarray version --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Dan Foreman-Mackey <[email protected]> * [pre-commit.ci] pre-commit autoupdate (#79) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.3 → v0.1.4](astral-sh/ruff-pre-commit@v0.1.3...v0.1.4) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * fixing jpu bug * adding light curve test * use jnpu.outer function in light_curve function since it's now implemented * [pre-commit.ci] pre-commit autoupdate (#85) updates: - [github.com/psf/black: 23.10.1 → 23.11.0](psf/black@23.10.1...23.11.0) - [github.com/astral-sh/ruff-pre-commit: v0.1.4 → v0.1.5](astral-sh/ruff-pre-commit@v0.1.4...v0.1.5) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Fixing issue where light curve computation fails because of incorporating JPU units (#86) * updating gitignore file to ignore __pycache__ directories * always ensure kite area is non-negative * Update .gitignore * fixing jpu bug * adding light curve test * use jnpu.outer function in light_curve function since it's now implemented --------- Co-authored-by: Dan Foreman-Mackey <[email protected]> * [pre-commit.ci] pre-commit autoupdate (#88) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.5 → v0.1.6](astral-sh/ruff-pre-commit@v0.1.5...v0.1.6) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (#90) Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11. - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](pypa/gh-action-pypi-publish@v1.8.10...v1.8.11) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch ... 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Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#95) updates: - [github.com/psf/black: 23.12.0 → 23.12.1](psf/black@23.12.0...23.12.1) - [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](astral-sh/ruff-pre-commit@v0.1.8...v0.1.9) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump actions/setup-python from 4 to 5 (#96) Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](actions/setup-python@v4...v5) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-major ... 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Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#99) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](astral-sh/ruff-pre-commit@v0.1.9...v0.1.11) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#100) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](astral-sh/ruff-pre-commit@v0.1.11...v0.1.13) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#101) * [pre-commit.ci] pre-commit autoupdate updates: - [github.com/psf/black: 23.12.1 → 24.1.1](psf/black@23.12.1...24.1.1) - [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](astral-sh/ruff-pre-commit@v0.1.13...v0.1.14) * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#103) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.14 → v0.2.0](astral-sh/ruff-pre-commit@v0.1.14...v0.2.0) - [github.com/kynan/nbstripout: 0.6.1 → 0.7.1](kynan/nbstripout@0.6.1...0.7.1) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * adding light_curves to init file so that LimbDarkLightCurve can be called * Adding Zenodo info for releases (#92) * Create .zenodo.json * Adding Lionel * Adding light_curves.py file to __init__ file (#104) * updating gitignore file to ignore __pycache__ directories * always ensure kite area is non-negative * Update .gitignore * fixing jpu bug * adding light curve test * use jnpu.outer function in light_curve function since it's now implemented * adding light_curves to init file so that LimbDarkLightCurve can be called --------- Co-authored-by: Dan Foreman-Mackey <[email protected]> * update transit-fitting tutorial * update notebook * updating index toctree * update .gitignore file * adding ipywidgets to pyproject.toml --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: Dan Foreman-Mackey <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Dan Foreman-Mackey <[email protected]>
dfm
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that referenced
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Feb 10, 2024
* Removing `quad` submodule and simplifying some jaxprs (#46) * remove quad, simplify jaxprs * adding zero-safe sqrt function * Adding tutorials (#35) * adding initial autodiff tutorial * updating tutorial dependencies * fixing autodiff tutorial * updating gitignore file to ignore __pycache__ directories * [pre-commit.ci] pre-commit autoupdate (#47) updates: - [github.com/charliermarsh/ruff-pre-commit: v0.0.270 → v0.0.272](astral-sh/ruff-pre-commit@v0.0.270...v0.0.272) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * adding transit tutorial notebook * additional minor changes to transit tutorial notebook * updating transit fitting tutorial notebook * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * [pre-commit.ci] pre-commit autoupdate (#50) updates: - https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit - [github.com/astral-sh/ruff-pre-commit: v0.0.272 → v0.0.276](astral-sh/ruff-pre-commit@v0.0.272...v0.0.276) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump pypa/gh-action-pypi-publish from 1.8.6 to 1.8.7 (#51) Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.6 to 1.8.7. - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](pypa/gh-action-pypi-publish@v1.8.6...v1.8.7) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#52) updates: - [github.com/psf/black: 23.3.0 → 23.7.0](psf/black@23.3.0...23.7.0) - [github.com/astral-sh/ruff-pre-commit: v0.0.276 → v0.0.277](astral-sh/ruff-pre-commit@v0.0.276...v0.0.277) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#53) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.277 → v0.0.278](astral-sh/ruff-pre-commit@v0.0.277...v0.0.278) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#54) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.278 → v0.0.281](astral-sh/ruff-pre-commit@v0.0.278...v0.0.281) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * update transit tutorial * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * changing number of steps in chain * change mcmc steps * [pre-commit.ci] pre-commit autoupdate (#56) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.281 → v0.0.282](astral-sh/ruff-pre-commit@v0.0.281...v0.0.282) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#58) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.282 → v0.0.284](astral-sh/ruff-pre-commit@v0.0.282...v0.0.284) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#59) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.284 → v0.0.285](astral-sh/ruff-pre-commit@v0.0.284...v0.0.285) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Migrating to hatch instead of poetry for build backend (#60) * migrating to hatch for infra * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * lint * fewer tests * only one macos test * not hashable * nothing really * fixing deprecation warning * faster tests --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#62) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.285 → v0.0.286](astral-sh/ruff-pre-commit@v0.0.285...v0.0.286) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#64) updates: - [github.com/psf/black: 23.7.0 → 23.9.1](psf/black@23.7.0...23.9.1) - [github.com/astral-sh/ruff-pre-commit: v0.0.286 → v0.0.288](astral-sh/ruff-pre-commit@v0.0.286...v0.0.288) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#66) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.288 → v0.0.291](astral-sh/ruff-pre-commit@v0.0.288...v0.0.291) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Implement exposure time integration (#57) * adding initial autodiff tutorial * updating tutorial dependencies * fixing autodiff tutorial * updating gitignore file to ignore __pycache__ directories * adding transit tutorial notebook * additional minor changes to transit tutorial notebook * updating transit fitting tutorial notebook * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update transit tutorial * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * changing number of steps in chain * change mcmc steps * Doesn't work yet but adding changes for implementing exposure time integration * adding stencil_order variable to separate from order variable * storing cchanges (doesn't work yet) * changes made for implementing a working version of exposure time integration * adding documentation text for order keyword argument * changing order keyword to limbdark_order for clarity and updating docs * removing tutorial notebooks from this branch --------- Co-authored-by: Dan F-M <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump actions/checkout from 3 to 4 (#67) Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](actions/checkout@v3...v4) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#68) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.291 → v0.0.292](astral-sh/ruff-pre-commit@v0.0.291...v0.0.292) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#69) updates: - [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Alternative implementation for rotation matrices (#63) * adding initial port of starry wigner code * fixing bug in rotation.dotR * fixing implementation for u2 * removing one condition * adding some TODOs to me * slight refactor * one more todo * don't test with square matrices * adding simple implementation of cel integral at tests * skip some tests that are hard for x64 * adding closed form implementaion of low order solution vector * removing closed form solution vector... moved to new branch * handling normalization; moving symbolic test * better tolerance handling * handling edge cases * removing cel * push before checking out main branch * always ensure kite area is non-negative * Update .gitignore * Ensuring the square of the kite area calculation is non-negative (#73) * updating gitignore file to ignore __pycache__ directories * always ensure kite area is non-negative * Update .gitignore --------- Co-authored-by: Dan Foreman-Mackey <[email protected]> * Update the basis computations to use sparse linear algebra (#72) * using sparse linear algebra for the basis computations * rename A -> basis * Adding initial flux implementation * adding special case of rotation for just z axis * removing tensordot function * removing flux function from this PR * Introducing units and refactoring Keplerian orbit models (#61) * adding units * adding example of how we might use units * adding tests for quantity_input decorator * adding docstring to decorator * adding doctring and tests for field * adding tests for keplerian * fixing edge cases test * updating keplerian tests * adding units to TransitOrbit * fixing python 3.9 errors * remove pyright from pre-commit * less stringent test comparisons * test tol for soln * sketching OO interface * default central * improving interface for keplerian system * Implementing polynomial basis (#76) * [pre-commit.ci] pre-commit autoupdate (#78) * [pre-commit.ci] pre-commit autoupdate updates: - [github.com/psf/black: 23.9.1 → 23.10.1](psf/black@23.9.1...23.10.1) - [github.com/astral-sh/ruff-pre-commit: v0.0.292 → v0.1.3](astral-sh/ruff-pre-commit@v0.0.292...v0.1.3) * Upper limit on xarray version --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Dan Foreman-Mackey <[email protected]> * [pre-commit.ci] pre-commit autoupdate (#79) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.3 → v0.1.4](astral-sh/ruff-pre-commit@v0.1.3...v0.1.4) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * fixing jpu bug * adding light curve test * use jnpu.outer function in light_curve function since it's now implemented * [pre-commit.ci] pre-commit autoupdate (#85) updates: - [github.com/psf/black: 23.10.1 → 23.11.0](psf/black@23.10.1...23.11.0) - [github.com/astral-sh/ruff-pre-commit: v0.1.4 → v0.1.5](astral-sh/ruff-pre-commit@v0.1.4...v0.1.5) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Fixing issue where light curve computation fails because of incorporating JPU units (#86) * updating gitignore file to ignore __pycache__ directories * always ensure kite area is non-negative * Update .gitignore * fixing jpu bug * adding light curve test * use jnpu.outer function in light_curve function since it's now implemented --------- Co-authored-by: Dan Foreman-Mackey <[email protected]> * [pre-commit.ci] pre-commit autoupdate (#88) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.5 → v0.1.6](astral-sh/ruff-pre-commit@v0.1.5...v0.1.6) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (#90) Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11. - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](pypa/gh-action-pypi-publish@v1.8.10...v1.8.11) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#93) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.6 → v0.1.7](astral-sh/ruff-pre-commit@v0.1.6...v0.1.7) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#94) updates: - [github.com/psf/black: 23.11.0 → 23.12.0](psf/black@23.11.0...23.12.0) - [github.com/astral-sh/ruff-pre-commit: v0.1.7 → v0.1.8](astral-sh/ruff-pre-commit@v0.1.7...v0.1.8) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump actions/download-artifact from 3 to 4 (#98) Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4. - [Release notes](https://github.com/actions/download-artifact/releases) - [Commits](actions/download-artifact@v3...v4) --- updated-dependencies: - dependency-name: actions/download-artifact dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#95) updates: - [github.com/psf/black: 23.12.0 → 23.12.1](psf/black@23.12.0...23.12.1) - [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](astral-sh/ruff-pre-commit@v0.1.8...v0.1.9) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump actions/setup-python from 4 to 5 (#96) Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](actions/setup-python@v4...v5) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump actions/upload-artifact from 3 to 4 (#97) Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4. - [Release notes](https://github.com/actions/upload-artifact/releases) - [Commits](actions/upload-artifact@v3...v4) --- updated-dependencies: - dependency-name: actions/upload-artifact dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#99) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](astral-sh/ruff-pre-commit@v0.1.9...v0.1.11) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#100) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](astral-sh/ruff-pre-commit@v0.1.11...v0.1.13) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#101) * [pre-commit.ci] pre-commit autoupdate updates: - [github.com/psf/black: 23.12.1 → 24.1.1](psf/black@23.12.1...24.1.1) - [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](astral-sh/ruff-pre-commit@v0.1.13...v0.1.14) * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#103) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.14 → v0.2.0](astral-sh/ruff-pre-commit@v0.1.14...v0.2.0) - [github.com/kynan/nbstripout: 0.6.1 → 0.7.1](kynan/nbstripout@0.6.1...0.7.1) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * adding light_curves to init file so that LimbDarkLightCurve can be called * Adding Zenodo info for releases (#92) * Create .zenodo.json * Adding Lionel * Adding light_curves.py file to __init__ file (#104) * updating gitignore file to ignore __pycache__ directories * always ensure kite area is non-negative * Update .gitignore * fixing jpu bug * adding light curve test * use jnpu.outer function in light_curve function since it's now implemented * adding light_curves to init file so that LimbDarkLightCurve can be called --------- Co-authored-by: Dan Foreman-Mackey <[email protected]> * update transit-fitting tutorial * update notebook * updating index toctree * update .gitignore file * adding ipywidgets to pyproject.toml --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: Dan Foreman-Mackey <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Dan Foreman-Mackey <[email protected]>
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* adding initial autodiff tutorial * updating tutorial dependencies * fixing autodiff tutorial * Adding transit fitting tutorial (#48) * Removing `quad` submodule and simplifying some jaxprs (#46) * remove quad, simplify jaxprs * adding zero-safe sqrt function * Adding tutorials (#35) * adding initial autodiff tutorial * updating tutorial dependencies * fixing autodiff tutorial * updating gitignore file to ignore __pycache__ directories * [pre-commit.ci] pre-commit autoupdate (#47) updates: - [github.com/charliermarsh/ruff-pre-commit: v0.0.270 → v0.0.272](astral-sh/ruff-pre-commit@v0.0.270...v0.0.272) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * adding transit tutorial notebook * additional minor changes to transit tutorial notebook * updating transit fitting tutorial notebook * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * [pre-commit.ci] pre-commit autoupdate (#50) updates: - https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit - [github.com/astral-sh/ruff-pre-commit: v0.0.272 → v0.0.276](astral-sh/ruff-pre-commit@v0.0.272...v0.0.276) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump pypa/gh-action-pypi-publish from 1.8.6 to 1.8.7 (#51) Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.6 to 1.8.7. - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](pypa/gh-action-pypi-publish@v1.8.6...v1.8.7) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#52) updates: - [github.com/psf/black: 23.3.0 → 23.7.0](psf/black@23.3.0...23.7.0) - [github.com/astral-sh/ruff-pre-commit: v0.0.276 → v0.0.277](astral-sh/ruff-pre-commit@v0.0.276...v0.0.277) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#53) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.277 → v0.0.278](astral-sh/ruff-pre-commit@v0.0.277...v0.0.278) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#54) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.278 → v0.0.281](astral-sh/ruff-pre-commit@v0.0.278...v0.0.281) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * update transit tutorial * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * changing number of steps in chain * change mcmc steps * [pre-commit.ci] pre-commit autoupdate (#56) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.281 → v0.0.282](astral-sh/ruff-pre-commit@v0.0.281...v0.0.282) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#58) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.282 → v0.0.284](astral-sh/ruff-pre-commit@v0.0.282...v0.0.284) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#59) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.284 → v0.0.285](astral-sh/ruff-pre-commit@v0.0.284...v0.0.285) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Migrating to hatch instead of poetry for build backend (#60) * migrating to hatch for infra * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * lint * fewer tests * only one macos test * not hashable * nothing really * fixing deprecation warning * faster tests --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#62) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.285 → v0.0.286](astral-sh/ruff-pre-commit@v0.0.285...v0.0.286) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#64) updates: - [github.com/psf/black: 23.7.0 → 23.9.1](psf/black@23.7.0...23.9.1) - [github.com/astral-sh/ruff-pre-commit: v0.0.286 → v0.0.288](astral-sh/ruff-pre-commit@v0.0.286...v0.0.288) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#66) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.288 → v0.0.291](astral-sh/ruff-pre-commit@v0.0.288...v0.0.291) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Implement exposure time integration (#57) * adding initial autodiff tutorial * updating tutorial dependencies * fixing autodiff tutorial * updating gitignore file to ignore __pycache__ directories * adding transit tutorial notebook * additional minor changes to transit tutorial notebook * updating transit fitting tutorial notebook * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update transit tutorial * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * changing number of steps in chain * change mcmc steps * Doesn't work yet but adding changes for implementing exposure time integration * adding stencil_order variable to separate from order variable * storing cchanges (doesn't work yet) * changes made for implementing a working version of exposure time integration * adding documentation text for order keyword argument * changing order keyword to limbdark_order for clarity and updating docs * removing tutorial notebooks from this branch --------- Co-authored-by: Dan F-M <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump actions/checkout from 3 to 4 (#67) Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](actions/checkout@v3...v4) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#68) updates: - [github.com/astral-sh/ruff-pre-commit: v0.0.291 → v0.0.292](astral-sh/ruff-pre-commit@v0.0.291...v0.0.292) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#69) updates: - [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Alternative implementation for rotation matrices (#63) * adding initial port of starry wigner code * fixing bug in rotation.dotR * fixing implementation for u2 * removing one condition * adding some TODOs to me * slight refactor * one more todo * don't test with square matrices * adding simple implementation of cel integral at tests * skip some tests that are hard for x64 * adding closed form implementaion of low order solution vector * removing closed form solution vector... moved to new branch * handling normalization; moving symbolic test * better tolerance handling * handling edge cases * removing cel * push before checking out main branch * always ensure kite area is non-negative * Update .gitignore * Ensuring the square of the kite area calculation is non-negative (#73) * updating gitignore file to ignore __pycache__ directories * always ensure kite area is non-negative * Update .gitignore --------- Co-authored-by: Dan Foreman-Mackey <[email protected]> * Update the basis computations to use sparse linear algebra (#72) * using sparse linear algebra for the basis computations * rename A -> basis * Adding initial flux implementation * adding special case of rotation for just z axis * removing tensordot function * removing flux function from this PR * Introducing units and refactoring Keplerian orbit models (#61) * adding units * adding example of how we might use units * adding tests for quantity_input decorator * adding docstring to decorator * adding doctring and tests for field * adding tests for keplerian * fixing edge cases test * updating keplerian tests * adding units to TransitOrbit * fixing python 3.9 errors * remove pyright from pre-commit * less stringent test comparisons * test tol for soln * sketching OO interface * default central * improving interface for keplerian system * Implementing polynomial basis (#76) * [pre-commit.ci] pre-commit autoupdate (#78) * [pre-commit.ci] pre-commit autoupdate updates: - [github.com/psf/black: 23.9.1 → 23.10.1](psf/black@23.9.1...23.10.1) - [github.com/astral-sh/ruff-pre-commit: v0.0.292 → v0.1.3](astral-sh/ruff-pre-commit@v0.0.292...v0.1.3) * Upper limit on xarray version --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Dan Foreman-Mackey <[email protected]> * [pre-commit.ci] pre-commit autoupdate (#79) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.3 → v0.1.4](astral-sh/ruff-pre-commit@v0.1.3...v0.1.4) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * fixing jpu bug * adding light curve test * use jnpu.outer function in light_curve function since it's now implemented * [pre-commit.ci] pre-commit autoupdate (#85) updates: - [github.com/psf/black: 23.10.1 → 23.11.0](psf/black@23.10.1...23.11.0) - [github.com/astral-sh/ruff-pre-commit: v0.1.4 → v0.1.5](astral-sh/ruff-pre-commit@v0.1.4...v0.1.5) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Fixing issue where light curve computation fails because of incorporating JPU units (#86) * updating gitignore file to ignore __pycache__ directories * always ensure kite area is non-negative * Update .gitignore * fixing jpu bug * adding light curve test * use jnpu.outer function in light_curve function since it's now implemented --------- Co-authored-by: Dan Foreman-Mackey <[email protected]> * [pre-commit.ci] pre-commit autoupdate (#88) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.5 → v0.1.6](astral-sh/ruff-pre-commit@v0.1.5...v0.1.6) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (#90) Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11. - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](pypa/gh-action-pypi-publish@v1.8.10...v1.8.11) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#93) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.6 → v0.1.7](astral-sh/ruff-pre-commit@v0.1.6...v0.1.7) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#94) updates: - [github.com/psf/black: 23.11.0 → 23.12.0](psf/black@23.11.0...23.12.0) - [github.com/astral-sh/ruff-pre-commit: v0.1.7 → v0.1.8](astral-sh/ruff-pre-commit@v0.1.7...v0.1.8) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump actions/download-artifact from 3 to 4 (#98) Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4. - [Release notes](https://github.com/actions/download-artifact/releases) - [Commits](actions/download-artifact@v3...v4) --- updated-dependencies: - dependency-name: actions/download-artifact dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#95) updates: - [github.com/psf/black: 23.12.0 → 23.12.1](psf/black@23.12.0...23.12.1) - [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](astral-sh/ruff-pre-commit@v0.1.8...v0.1.9) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump actions/setup-python from 4 to 5 (#96) Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](actions/setup-python@v4...v5) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump actions/upload-artifact from 3 to 4 (#97) Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4. - [Release notes](https://github.com/actions/upload-artifact/releases) - [Commits](actions/upload-artifact@v3...v4) --- updated-dependencies: - dependency-name: actions/upload-artifact dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#99) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](astral-sh/ruff-pre-commit@v0.1.9...v0.1.11) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#100) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](astral-sh/ruff-pre-commit@v0.1.11...v0.1.13) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#101) * [pre-commit.ci] pre-commit autoupdate updates: - [github.com/psf/black: 23.12.1 → 24.1.1](psf/black@23.12.1...24.1.1) - [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](astral-sh/ruff-pre-commit@v0.1.13...v0.1.14) * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#103) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.14 → v0.2.0](astral-sh/ruff-pre-commit@v0.1.14...v0.2.0) - [github.com/kynan/nbstripout: 0.6.1 → 0.7.1](kynan/nbstripout@0.6.1...0.7.1) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * adding light_curves to init file so that LimbDarkLightCurve can be called * Adding Zenodo info for releases (#92) * Create .zenodo.json * Adding Lionel * Adding light_curves.py file to __init__ file (#104) * updating gitignore file to ignore __pycache__ directories * always ensure kite area is non-negative * Update .gitignore * fixing jpu bug * adding light curve test * use jnpu.outer function in light_curve function since it's now implemented * adding light_curves to init file so that LimbDarkLightCurve can be called --------- Co-authored-by: Dan Foreman-Mackey <[email protected]> * update transit-fitting tutorial * update notebook * updating index toctree * update .gitignore file * adding ipywidgets to pyproject.toml --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: Dan Foreman-Mackey <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Dan Foreman-Mackey <[email protected]> * fixing blank line in pyproject.toml * Drafting faster transit fitting tutorial (#119) * drafting faster transit fitting tutorial * removing text and section on divergences --------- Co-authored-by: Soichiro Hattori <[email protected]> --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: soichiro-hattori <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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