Transfered to evolbioinfo

evolbioinfo · Mar 22, 2019 · b4619c2 · b4619c2
1 parent f2713de
commit b4619c2
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Showing 113 changed files with 229 additions and 229 deletions.
diff --git a/Makefile b/Makefile
@@ -2,9 +2,9 @@ DEP_EXECUTABLE := ${GOPATH}/bin/dep
 GO_EXECUTABLE := go
 VERSION := $(shell git describe --abbrev=10 --dirty --always --tags)
 DIST_DIRS := find * -type d -exec
-VERSION_PACKAGE := github.com/fredericlemoine/gotree/cmd.Version
+VERSION_PACKAGE := github.com/evolbioinfo/gotree/cmd.Version
 NAME := gotree
-PACKAGE:=github.com/fredericlemoine/gotree
+PACKAGE:=github.com/evolbioinfo/gotree
 
 all: dep build test
 

diff --git a/acr/acr_test.go b/acr/acr_test.go
@@ -5,8 +5,8 @@ import (
 	"strings"
 	"testing"
 
-	"github.com/fredericlemoine/gotree/io/newick"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io/newick"
+	"github.com/evolbioinfo/gotree/tree"
 )
 
 func TestACRDELTRANParsimony(t *testing.T) {

diff --git a/acr/parsimony.go b/acr/parsimony.go
@@ -8,7 +8,7 @@ import (
 	"sort"
 	"strings"
 
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/tree"
 )
 
 const (

diff --git a/asr/parsimony.go b/asr/parsimony.go
@@ -7,8 +7,8 @@ import (
 	"math/rand"
 
 	"github.com/fredericlemoine/goalign/align"
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 )
 
 const (

diff --git a/cmd/acr.go b/cmd/acr.go
@@ -10,9 +10,9 @@ import (
 	"regexp"
 	"strings"
 
-	"github.com/fredericlemoine/gotree/acr"
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/acr"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/annotate.go b/cmd/annotate.go
@@ -9,11 +9,11 @@ import (
 	"os"
 	"strings"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/io/fileutils"
-	"github.com/fredericlemoine/gotree/mutils"
-	"github.com/fredericlemoine/gotree/support"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/io/fileutils"
+	"github.com/evolbioinfo/gotree/mutils"
+	"github.com/evolbioinfo/gotree/support"
+	"github.com/evolbioinfo/gotree/tree"
 
 	"github.com/spf13/cobra"
 )

diff --git a/cmd/asr.go b/cmd/asr.go
@@ -10,10 +10,10 @@ import (
 	"github.com/fredericlemoine/goalign/align"
 	"github.com/fredericlemoine/goalign/io/fasta"
 	"github.com/fredericlemoine/goalign/io/phylip"
-	"github.com/fredericlemoine/gotree/asr"
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/io/utils"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/asr"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/io/utils"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/balancedtree.go b/cmd/balancedtree.go
@@ -3,8 +3,8 @@ package cmd
 import (
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/bipartitiontree.go b/cmd/bipartitiontree.go
@@ -5,8 +5,8 @@ import (
 	"fmt"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/booster.go b/cmd/booster.go
@@ -5,9 +5,9 @@ import (
 	goio "io"
 	"time"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/support"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/support"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/brlencut.go b/cmd/brlencut.go
@@ -5,8 +5,8 @@ import (
 	goio "io"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/caterpillartree.go b/cmd/caterpillartree.go
@@ -3,8 +3,8 @@ package cmd
 import (
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/classical.go b/cmd/classical.go
@@ -19,9 +19,9 @@ import (
 	goio "io"
 	"time"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/support"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/support"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/clearcomments.go b/cmd/clearcomments.go
@@ -4,8 +4,8 @@ import (
 	goio "io"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/clearlength.go b/cmd/clearlength.go
@@ -4,8 +4,8 @@ import (
 	goio "io"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/clearsupport.go b/cmd/clearsupport.go
@@ -4,8 +4,8 @@ import (
 	goio "io"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/collapsebrlen.go b/cmd/collapsebrlen.go
@@ -4,8 +4,8 @@ import (
 	goio "io"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/collapsedepth.go b/cmd/collapsedepth.go
@@ -4,8 +4,8 @@ import (
 	goio "io"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/collapsesingle.go b/cmd/collapsesingle.go
@@ -4,8 +4,8 @@ import (
 	goio "io"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/collapsesupport.go b/cmd/collapsesupport.go
@@ -4,8 +4,8 @@ import (
 	goio "io"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/comparedistances.go b/cmd/comparedistances.go
@@ -6,9 +6,9 @@ import (
 	goio "io"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/support"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/support"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/compareedges.go b/cmd/compareedges.go
@@ -7,9 +7,9 @@ import (
 	goio "io"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/support"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/support"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/comparetips.go b/cmd/comparetips.go
@@ -6,8 +6,8 @@ import (
 	goio "io"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/comparetrees.go b/cmd/comparetrees.go
@@ -7,8 +7,8 @@ import (
 	goio "io"
 	"runtime"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 )
 
 var comparetreeidentical bool

diff --git a/cmd/computesupport.go b/cmd/computesupport.go
@@ -3,7 +3,7 @@ package cmd
 import (
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
+	"github.com/evolbioinfo/gotree/io"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/consensus.go b/cmd/consensus.go
@@ -4,8 +4,8 @@ import (
 	goio "io"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/cyjs.go b/cmd/cyjs.go
@@ -7,9 +7,9 @@ import (
 	"os"
 	"path/filepath"
 
-	"github.com/fredericlemoine/gotree/draw"
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/draw"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/divide.go b/cmd/divide.go
@@ -5,8 +5,8 @@ import (
 	goio "io"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/dlncbi.go b/cmd/dlncbi.go
@@ -3,9 +3,9 @@ package cmd
 import (
 	"os"
 
-	"github.com/fredericlemoine/gotree/download"
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/download"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/edges.go b/cmd/edges.go
@@ -5,8 +5,8 @@ import (
 	goio "io"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/edgetrees.go b/cmd/edgetrees.go
@@ -6,8 +6,8 @@ import (
 	"os"
 	"sync"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/itoldl.go b/cmd/itoldl.go
@@ -4,8 +4,8 @@ import (
 	"errors"
 	"io/ioutil"
 
-	"github.com/fredericlemoine/gotree/download"
-	"github.com/fredericlemoine/gotree/io"
+	"github.com/evolbioinfo/gotree/download"
+	"github.com/evolbioinfo/gotree/io"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/itolup.go b/cmd/itolup.go
@@ -6,9 +6,9 @@ import (
 	"os"
 	"time"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
-	"github.com/fredericlemoine/gotree/upload"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
+	"github.com/evolbioinfo/gotree/upload"
 	"github.com/spf13/cobra"
 )
 

diff --git a/cmd/matrix.go b/cmd/matrix.go
@@ -5,8 +5,8 @@ import (
 	goio "io"
 	"os"
 
-	"github.com/fredericlemoine/gotree/io"
-	"github.com/fredericlemoine/gotree/tree"
+	"github.com/evolbioinfo/gotree/io"
+	"github.com/evolbioinfo/gotree/tree"
 	"github.com/spf13/cobra"
 )
-Original file line number
+Diff line change
@@ Expand Up / @@ -8,7 +8,7 @@ import ( @@
     	"sort"
     	"strings"
-    	"github.com/fredericlemoine/gotree/tree"
+    	"github.com/evolbioinfo/gotree/tree"
     )
     const (
@@ Expand Down @@