Update test.sh

evolbioinfo · Jun 30, 2017 · 61867d6 · 61867d6
1 parent 6635c66
commit 61867d6
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/test.sh b/test.sh
@@ -585,7 +585,7 @@ cat > annotated <<EOF
 ((((((((Gorilla_gorilla_gorilla[subspecies],Pan_troglodytes[species],Homo_sapiens[species])Homo/Pan/Gorilla_group[subfamily],Pongo_pygmaeus_abelii[species])Pongidae[family],Hylobates_pileatus[species])Hominoidea[superfamily],(Macaca_sylvanus[species],Macaca_fascicularis_fascicularis[subspecies],Macaca_fuscata[species],Macaca_mulatta[species])Macaca[genus])Catarrhini[parvorder],Saimiri_sciureus[species])Simiiformes[infraorder],Tarsius_tarsier[species])Haplorrhini[suborder],Lemur_sp.[species])Primates[order],Mus_musculus[species],Bos_taurus[species])Euarchontoglires[superorder];
 EOF
 cat > expected <<EOF
-(((((Hylobates_pileatus:0.23988592,(Pongo_pygmaeus_abelii:0.11809071,(Gorilla_gorilla_gorilla:0.13596645,(Homo_sapiens:0.11344407,Pan_troglodytes:0.11665038)Pan_troglodytes_1_2:0.02364476)Homo/Pan/Gorilla_group_0_3:0.04257513)Pongidae_0_4:0.15711475)Hominoidea_0_5:0.03966791,(Macaca_sylvanus:0.06332916,(Macaca_fascicularis_fascicularis:0.07605049,(Macaca_mulatta:0.06998962,Macaca_fuscata:0)Macaca_fuscata_1_2:0.08492791)Macaca_1_3:0.02236558)Macaca_0_4:0.11208218)Catarrhini_0_5:0.0477543,Saimiri_sciureus:0.25824985)Simiiformes_0_10:0.14311537,(Tarsius_tarsier:0.62272677,Lemur_sp.:0.40249393)Tarsius_tarsier_1_2:0)Primates_0_12:0.077084225,(Mus_musculus:0.4057381,Bos_taurus:0.65776307)Primates_0_2:0.077084225);
+(((((Hylobates_pileatus:0.23988592,(Pongo_pygmaeus_abelii:0.11809071,(Gorilla_gorilla_gorilla:0.13596645,(Homo_sapiens:0.11344407,Pan_troglodytes:0.11665038)Pan_troglodytes_1_2:0.02364476)Homo/Pan/Gorilla_group_0_3:0.04257513)Pongidae_0_4:0.15711475)Hominoidea_0_5:0.03966791,(Macaca_sylvanus:0.06332916,(Macaca_fascicularis_fascicularis:0.07605049,(Macaca_mulatta:0.06998962,Macaca_fuscata:0)Macaca_fuscata_1_2:0.08492791)Macaca_1_3:0.02236558)Macaca_0_4:0.11208218)Catarrhini_0_9:0.0477543,Saimiri_sciureus:0.25824985)Simiiformes_0_10:0.14311537,(Tarsius_tarsier:0.62272677,Lemur_sp.:0.40249393)Tarsius_tarsier_1_2:0)Primates_0_12:0.077084225,(Mus_musculus:0.4057381,Bos_taurus:0.65776307)Primates_0_2:0.077084225);
 EOF
 gotree annotate -i inferred -c annotated -o result
 diff expected result