Run spec tests and linter

Move dependencies to pyproject.toml #4252

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Run time

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Job	Run time
whitespace	2s
gen-modcheck	3m 19s
lint	2m 57s
pyspec-tests (phase0)	2m 8s
pyspec-tests (altair)	3m 35s
pyspec-tests (bellatrix)	5m 7s
pyspec-tests (capella)	4m 12s
pyspec-tests (deneb)	4m 23s
pyspec-tests (electra)	7m 18s
pyspec-tests (fulu)	21m 41s
pyspec-tests (whisk)	1m 40s
	56m 22s