Skip to content

Commit

Permalink
Rm vignette link as canonical form cannot be found
Browse files Browse the repository at this point in the history
  • Loading branch information
pratikunterwegs committed Dec 14, 2023
1 parent c5d9a5f commit 7f10391
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions README.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -131,7 +131,7 @@ ggplot(data_cfr) +
) +
scale_colour_brewer(
palette = "Dark2",
labels = c("Corrected CFR","Naive CFR"),
labels = c("Corrected CFR", "Naive CFR"),
name = NULL
) +
scale_fill_brewer(
Expand Down Expand Up @@ -168,7 +168,7 @@ Please note that the _{{ packagename }}_ project is released with a [Contributor

_cfr_ functionality overlaps with that of some other packages, including

- [_coarseDataTools_](https://cran.r-project.org/package=coarseDataTools) is an R package that allows estimation of relative [case fatality risk](https://cran.r-project.org/web/packages/coarseDataTools/vignettes/CFR_vignette.html) between covariate groups while accounting for delays due to survival time, when numbers of deaths and recoveries over time are known. _cfr_ uses simpler methods from @nishiura2009 that can be applied when only cases and deaths over time are known, generating estimates based on all data to date, as well as time-varying estimates. _cfr_ can also convert estimates of cases with known outcomes over time into an estimate of under-ascertainment, if a baseline estimate of fatality risk is available from the literature (e.g. from past outbreaks).
- [_coarseDataTools_](https://cran.r-project.org/package=coarseDataTools) is an R package that allows estimation of relative case fatality risk between covariate groups while accounting for delays due to survival time, when numbers of deaths and recoveries over time are known. _cfr_ uses simpler methods from @nishiura2009 that can be applied when only cases and deaths over time are known, generating estimates based on all data to date, as well as time-varying estimates. _cfr_ can also convert estimates of cases with known outcomes over time into an estimate of under-ascertainment, if a baseline estimate of fatality risk is available from the literature (e.g. from past outbreaks).
- [_EpiNow2_](https://cran.r-project.org/package=EpiNow2) is an R package that can allow estimation of case fatality risk if it is defined as a secondary observation of cases. In particular, it allows for estimation that accounts for the smooth underlying epidemic process, but this requires additional computational effort. A comparison of these methods is planned for a future release.

_cfr_ is in future expected to benefit from the functionality of the forthcoming [_epiparameter_ package](https://epiverse-trace.github.io/epiparameter/), which is also developed by Epiverse-TRACE. _epiparameter_ aims to provide a library of epidemiological parameters to parameterise delay density functions, as well as the convenient `<epidist>` class to store, access, and pass these parameters for delay correction.
Expand Down

0 comments on commit 7f10391

Please sign in to comment.