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5th batch of SbD4Nano terms #697

Merged
merged 13 commits into from
Apr 19, 2024
5 changes: 5 additions & 0 deletions config/go.iris
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Expand Up @@ -16,3 +16,8 @@
+D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0051493 regulation of cytoskeleton organization
+D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0141085 regulation of inflammasome-mediated signaling pathway
+(http://purl.obolibrary.org/obo/GO_0003824):http://purl.obolibrary.org/obo/GO_0016175 superoxide-generating NAD(P)H oxidase activity
+D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO:0016192 vesicle-mediated transport
+D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0002433 immune response-regulating cell surface receptor signaling pathway involved in phagocytosis
+(http://purl.obolibrary.org/obo/GO_0003824):http://purl.obolibrary.org/obo/GO_0004457 lactate dehydrogenase activity
+(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0070527 platelet aggregation
+D(http://purl.obolibrary.org/obo/GO_0009987):http://purl.obolibrary.org/obo/GO_0034121 regulation of TLR pathway
1 change: 1 addition & 0 deletions config/ncit.iris
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Expand Up @@ -120,3 +120,4 @@
+(http://purl.obolibrary.org/obo/OBI_0100026):http://purl.obolibrary.org/obo/NCIT_C14271 S cerevisiae
+(http://www.bioassayontology.org/bao#BAO_0000523):http://purl.obolibrary.org/obo/NCIT_C77680 injection site
+(http://purl.obolibrary.org/obo/UBERON_0000062):http://purl.obolibrary.org/obo/NCIT_C12428 trachea
+D(http://purl.obolibrary.org/obo/CHEBI_59999):http://purl.obolibrary.org/obo/NCIT_C1940 element
10 changes: 10 additions & 0 deletions internal-dev/bao-ext.owl
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Expand Up @@ -335,6 +335,16 @@
</rdfs:subClassOf>
</owl:Class>


<!-- http://purl.enanomapper.net/onto/ENM_8553741 -->

<owl:Class rdf:about="http://purl.enanomapper.net/onto/ENM_8553741">
<rdfs:subClassOf rdf:resource="http://www.bioassayontology.org/bao#BAO_0002752"/>
<rdfs:subClassOf rdf:resource="http://www.bioassayontology.org/bao#BAO_0080042"/>
<rdfs:subClassOf rdf:resource="http://purl.enanomapper.org/onto/ENM_0000045"/>
<rdfs:label xml:lang="en">nanoparticle uptake efficiency endpoint</rdfs:label>
</owl:Class>

</rdf:RDF>

<!-- Generated by the OWL API (version 4.2.8.20170104-2310) https://github.com/owlcs/owlapi -->
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6 changes: 6 additions & 0 deletions internal-dev/cheminf-ext.owl
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Expand Up @@ -114,6 +114,12 @@
<rdfs:label xml:lang="en">BET surface area endpoint</rdfs:label>
</owl:Class>

<!-- http://purl.enanomapper.net/onto/ENM_0310210 -->

<owl:Class rdf:about="http://purl.enanomapper.net/onto/ENM_0310210">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<rdfs:label xml:lang="en">Interaction potential</rdfs:label>
</owl:Class>
</rdf:RDF>


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15 changes: 15 additions & 0 deletions internal-dev/go-ext.owl
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Expand Up @@ -30,4 +30,19 @@
<rdfs:label xml:lang="en">Enzymatic degradation</rdfs:label>
</owl:Class>

<!-- http://purl.enanomapper.net/onto/ENM_2866074 -->
<owl:Class rdf:about="http://purl.enanomapper.net/onto/ENM_2866074">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0002433"/>
<rdfs:label xml:lang="en">CR-mediated phagocytic pathway</rdfs:label>
<rdfs:label xml:lang="en">Complement receptor-mediated phagocytic pathway</rdfs:label>
</owl:Class>

<!-- http://purl.enanomapper.net/onto/ENM_9822611 -->
<owl:Class rdf:about="http://purl.enanomapper.net/onto/ENM_9822611">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0002433"/>
<rdfs:label xml:lang="en">MR-mediated phagocytic pathway</rdfs:label>
<rdfs:label xml:lang="en">Mannose receptor-mediated phagocytic pathway</rdfs:label>
</owl:Class>


</rdf:RDF>
6 changes: 6 additions & 0 deletions internal-dev/obi-ext.owl
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Expand Up @@ -431,6 +431,12 @@
<owl:Class rdf:about="http://purl.enanomapper.org/onto/ENM_8000279">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000070"/>
<rdfs:label xml:lang="en">NP crossing ICP-OES</rdfs:label>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://www.bioassayontology.org/bao#BAO_0000208"/>
<owl:someValuesFrom rdf:resource="http://purl.enanomapper.net/onto/ENM_8553741"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>


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8 changes: 8 additions & 0 deletions internal-dev/pato-ext.owl
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Expand Up @@ -61,5 +61,13 @@
<obo:IAO_0000115>Structural quality of a material containing pores with diameters between 2 and 50 nm</obo:IAO_0000115>
</owl:Class>

<!-- http://purl.enanomapper.net/onto/ENM_2169340 -->

<owl:Class rdf:about="http://purl.enanomapper.net/onto/ENM_2169340">
<rdfs:subClassOf rdf:resource="http://purl.bioontology.org/ontology/npo#NPO_1597"/>
<rdfs:label xml:lang="en">Pathogen-associated molecular patterns</rdfs:label>
<obo:IAO_0000115>parts of biomolecules associated with pathogens, such as bacteria, viruses, fungi, and other microorganisms, and can be recognized by pattern recognition receptors (PRRs) of the innate immune system</obo:IAO_0000115>
</owl:Class>


</rdf:RDF>
25 changes: 25 additions & 0 deletions internal-dev/uo-ext.owl
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@@ -0,0 +1,25 @@
<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.enanomapper.net/onto/internal/ext-ext.owl#"
xml:base="http://purl.enanomapper.net/onto/internal/ext-ext.owl"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:dc="http://purl.org/dc/elements/1.1/">

<owl:Ontology rdf:about="http://enanomapper.github.io/ontologies/internal/ext-ext.owl">
<dc:contributor>Javier Millan Acosta</dc:contributor>
<dc:license>CC-BY 4.0 https://creativecommons.org/licenses/by/4.0/</dc:license>
<rdfs:comment>This ontology contains proposed extensions to UO, which in due course will be submitted to the ext. </rdfs:comment>
</owl:Ontology>

<!-- http://purl.enanomapper.net/onto/ENM_6804785 -->

<owl:Class rdf:about="http://purl.enanomapper.net/onto/ENM_6804785">
<rdfs:subClassOf rdf:resource="http://www.bioassayontology.org/bao#BAO_0002752"/>
<rdfs:label xml:lang="en">ng/μg protein</rdfs:label>
</owl:Class>

</rdf:RDF>
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