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  • data evaluation in perpendicular line scanning FCS

    Python Other Updated Feb 8, 2025
  • Low-level OO Perl interface for NCBI's eutils

    Perl Updated Jan 27, 2025
  • phast Public

    Forked from CshlSiepelLab/phast

    PHAST

    C Other Updated Jan 5, 2025
  • nixpy Public

    Forked from G-Node/nixpy

    Python library for NIX

    Python Other Updated Dec 17, 2024
  • Unicycler Public

    Forked from rrwick/Unicycler

    hybrid assembly pipeline for bacterial genomes

    C++ GNU General Public License v3.0 Updated Dec 9, 2024
  • leidenalg Public

    Forked from vtraag/leidenalg

    Implementation of the Leiden algorithm for various quality functions to be used with igraph in Python.

    Python GNU General Public License v3.0 Updated Dec 6, 2024
  • iva Public

    Forked from sanger-pathogens/iva

    de novo virus assembler of Illumina paired reads

    Python Other Updated Dec 4, 2024
  • UNCALLED Public

    Forked from skovaka/UNCALLED

    Raw nanopore signal mapper that enables real-time targeted sequencing

    C++ MIT License Updated Dec 3, 2024
  • Scoary Public

    Forked from AdmiralenOla/Scoary

    Pan-genome wide association studies

    Python GNU General Public License v3.0 Updated Dec 2, 2024
  • pyxnat Public

    Forked from pyxnat/pyxnat

    XNAT in Python

    Python Other Updated Dec 1, 2024
  • A powerful, accurate, and easy-to-use Python library for doing colorspace conversions

    Python MIT License Updated Nov 29, 2024
  • treetime Public

    Forked from neherlab/treetime

    Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

    Jupyter Notebook MIT License Updated Nov 9, 2024
  • pauvre Public

    Forked from conchoecia/pauvre

    Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.

    C Updated Nov 7, 2024
  • bcbb Public

    Forked from chapmanb/bcbb

    Incubator for useful bioinformatics code, primarily in Python and R

    Python Updated Nov 5, 2024
  • bmtk Public

    Forked from AllenInstitute/bmtk

    Brain Modeling Toolkit

    Python BSD 3-Clause "New" or "Revised" License Updated Oct 16, 2024
  • Fastaq Public

    Forked from sanger-pathogens/Fastaq

    Python3 scripts to manipulate FASTA and FASTQ files

    Python Other Updated Oct 16, 2024
  • jam-lib Public

    Forked from rambaut/jam-lib

    Automatically exported from code.google.com/p/jam-lib

    Java Updated Oct 11, 2024
  • dnaio Public

    Forked from marcelm/dnaio

    Efficiently read and write sequencing data from Python

    Python MIT License Updated Oct 9, 2024
  • pyfaidx Public

    Forked from mdshw5/pyfaidx

    Efficient pythonic random access to fasta subsequences

    Python Other Updated Oct 9, 2024
  • nipy Public

    Forked from nipy/nipy

    Neuroimaging in Python FMRI analysis package

    Python Other Updated Oct 4, 2024
  • biopython Public

    Forked from biopython/biopython

    Official git repository for Biopython (originally converted from CVS)

    Python Other Updated Sep 18, 2024
  • MindTheGap Public

    Forked from GATB/MindTheGap

    MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.

    C++ GNU Affero General Public License v3.0 Updated Sep 6, 2024
  • seqcluster Public

    Forked from lpantano/seqcluster

    small RNA analysis from NGS data

    HTML MIT License Updated Aug 24, 2024
  • pairix Public

    Forked from 4dn-dcic/pairix

    1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

    C MIT License Updated Aug 23, 2024
  • cuteSV Public

    Forked from tjiangHIT/cuteSV

    Long read based human genomic structural variation detection with cuteSV

    Python MIT License Updated Aug 22, 2024
  • The Zonemaster CLI - part of the Zonemaster project

    Perl Other Updated Aug 21, 2024
  • The Zonemaster Engine - part of the Zonemaster project

    Perl Other Updated Aug 21, 2024
  • brian2 Public

    Forked from brian-team/brian2

    Brian is a free, open source simulator for spiking neural networks.

    Python Other Updated Aug 11, 2024
  • thesias Public

    Forked from daissi/thesias

    THESIAS: Testing Haplotype Effects In Association Studies

    C GNU General Public License v3.0 Updated Jul 28, 2024
  • Building Math::GSL with GitHub Actions

    Perl Updated Jul 25, 2024