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23 Open 33 Closed
23 Open 33 Closed
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Issues list

CLI should handle errors in any case bug Something isn't working mars-cli
#101 opened Jan 31, 2025 by kdp-cloud
1
@kdp-cloud
ENA repository API return a response code 200 even when the submission failed repository API service
#100 opened Jan 17, 2025 by bedroesb
ENA run accession is not in the MARS receipt repository API service
#99 opened Jan 17, 2025 by bedroesb
Successful ENA submission even when the receipt says otherwise mars-cli
#97 opened Jan 2, 2025 by bedroesb
Representation of QC samples and associated runs in ISA and their deposition to Metabolights
#95 opened Dec 3, 2024 by proccaserra
@proccaserra
Perform an actual multi-omic submission mars-cli
#92 opened Nov 21, 2024 by kdp-cloud
7 tasks
@kdp-cloud
Update BioSamples entry with external references mars-cli
#91 opened Nov 19, 2024 by bedroesb
@kdp-cloud
BioSamples submission is not submitting any metadata repository API service
#90 opened Nov 19, 2024 by bedroesb
Create a MARS logo
#86 opened Nov 8, 2024 by bedroesb
2
Update main Readme and diagram documentation Improvements or additions to documentation
#85 opened Nov 8, 2024 by bedroesb
2 tasks
Clean up test-data and make sure all provided ISA-JSONs work
#84 opened Nov 8, 2024 by bedroesb
Alias in ISA-JSON is not the same as the one submitted to ENA mars-cli
#83 opened Nov 8, 2024 by bedroesb
Do we want to let Samples inherit Source material info to comply with the ENA minimal checklist? (collection date and geografical location) repository API service
#81 opened Nov 8, 2024 by bedroesb
1
ISA Investigation is being submitted as a ENA Study/Project repository API service
#80 opened Nov 8, 2024 by bedroesb
4
assays > processSequence > parameterValues are not being parsed by the ENA endpoint repository API service
#73 opened Nov 7, 2024 by bedroesb
@dipayan1985
Settle on accepted protocols / repository repository API service
#55 opened Nov 3, 2024 by bedroesb
1
Implementation of JSONata for secondary validation enhancement New feature or request mars-cli
#51 opened Oct 10, 2024 by kdp-cloud
1
Take away BioHackathon mentions in code of BioSamples and ENA repository API service
#45 opened Aug 21, 2024 by bedroesb
BioSamples Repository services only accept ontology annotations.
#40 opened Jul 10, 2024 by xiaoranzhou
ISA RO-crate support enhancement New feature or request
#39 opened Jun 19, 2024 by kdp-cloud
Metadata validation prior to actual submission enhancement New feature or request mars-cli
#36 opened Jun 4, 2024 by kdp-cloud
Add healthcheck endpoint to repository API spec repository API service
#34 opened Apr 26, 2024 by apriltuesday
Include extra metadata for target repositories
#3 opened Feb 14, 2024 by kdp-cloud
1
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