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include annovar as dependency for scNanoGPS
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boegel authored Jan 8, 2025
1 parent 29a6c95 commit 2eb6589
Showing 1 changed file with 1 addition and 8 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,7 @@ dependencies = [
('BCFtools', '1.18'),
('gffread', '0.12.7'),
('LIQA', '1.3.4'),
# Optional - load 'annovar/20200607-GCCcore-12.3.0-Perl-5.36.1' to make 'reporter_SNV.py' work
('annovar', '20200607'),
]

exts_defaultclass = 'PythonPackage'
Expand Down Expand Up @@ -66,11 +66,4 @@ sanity_check_commands = [

modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'}

modloadmsg = """
If you like to use script 'reporter_SNV.py' you need to load annovar module as:
'ml annovar/20200607-GCCcore-12.3.0-Perl-5.36.1'
Source files of annovar (latest) are available after registration on:
http://www.openbioinformatics.org/annovar/annovar_download_form.php
"""

moduleclass = 'bio'

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