Merge pull request #1 from dylansutterlin/elm

Local bug fix on elm, ready to run
dylansutterlin · Mar 8, 2024 · ebb6696 · ebb6696
2 parents aaa9df6 + 567c27d
commit ebb6696
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/main.py b/main.py
@@ -16,7 +16,7 @@
     pwd_main=pwd_main,
     conf_dir=conf_dir,
     save_base= os.path.join(pwd_main, 'debug'),
-    save_folder="difumo64_correlation",
+    save_folder="difumo64_correl_negw",
     atlas_name="difumo64",
     sphere_coord = [(54, -28, 26)],
     connectivity_measure="correlation",

diff --git a/scripts/func.py b/scripts/func.py
@@ -592,4 +592,4 @@ def export_txt_NBS(save_to, atlas, atlas_labels, pre_connectomes, post_connectom
             os.path.join(save_to, f"diffcon-{sub}.txt"),
             diffmat,
             fmt="%.4f",
-        )
+        )
diff --git a/scripts/plot_func.py b/scripts/plot_func.py
@@ -277,7 +277,7 @@ def dist_mean_edges(cond, matrix_list, save_to ):
         #plt.tight_layout()
 
 def visu_correl(vd, vi, save_to, vd_name, vi_name, title):
-    corr_coeff, p_value = pearsonr(vd, vi)
+    corr_coeff, p_value = stats.pearsonr(vd, vi)
     r_squared = np.corrcoef(np.array(vd), np.array(vi))[0, 1]**2
     # Scatter plot of vd score vs mean rCBF diff
     plt.scatter(vd, vi)