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dportik committed Jan 18, 2021
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## Overview:

This is meant to be a general use script to run `dadi` to fit any model on an afs/jsfs with one to three populations, then create figures comparing the data and model sfs. To use this workflow, you'll need a SNPs input text file to create an allele frequency or joint site frequency spectrum object. Alternatively, you can import a frequency spectrum of your own creation, editing the script appropriately (see dadi manual). The user will have to edit information about their allele frequency spectrum, and a #************** marks lines in the script that will have to be edited.
This is meant to be a general use script to generate combinations of projection sizes to determine the resulting numbers of segregating sites. To use this workflow, you'll need a SNPs input text file to create an allele frequency or joint site frequency spectrum object. Alternatively, you can import a frequency spectrum of your own creation, editing the script appropriately (see dadi manual). The user will have to edit information about their allele frequency spectrum, and a #************** marks lines in the script that will have to be edited.

The user provides an input SNPs file along with the relevant information (population IDs, folded vs. unfolded). Finally, a maximum projection size is set and a minimum fraction required for the projection sizes. The script will then generate all permutations of projection size combinations and write the results to stdout.

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