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dportik committed Feb 2, 2019
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## Complete Instructions for Analyses

An overview of the components of **SuperCRUNCH** can be found on the [wiki overview page](https://github.com/dportik/SuperCRUNCH/wiki/1:-Analysis-Overview). This page outlines all major topics and navigates to detailed instructions for all major topics, including usage for all modules, proposed workflows, and common issues.
An overview of the components of **SuperCRUNCH** can be found on the [wiki overview page](https://github.com/dportik/SuperCRUNCH/wiki/1:-Analysis-Overview). This page outlines all major topics and navigates to detailed instructions for each step, including usage for all modules, proposed workflows, and common issues.

## Tutorials and Examples

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+ **Population Dataset (*Uma*):** SuperCRUNCH analysis to retrieve population-level data for the lizard genus *Uma*, using sequence data downloaded directly from NCBI. [Direct link](https://osf.io/49wz3/).
+ **Population Dataset (*Callisaurus*):** SuperCRUNCH analysis to retrieve population-level data for the lizard genus *Callisaurus*, using sequence data. [Direct link](https://osf.io/6bwhf/).

Several example files are also provided in the [data folder](https://github.com/dportik/SuperCRUNCH/tree/master/data). These include locus search terms files and reference sequence sets.
On the OSF project page, there are also several analyses that compare the performance of **SuperCRUNCH** to other available programs.

In addition to the OSF page, several example files are also provided in the [data folder](https://github.com/dportik/SuperCRUNCH/tree/master/data). These include locus search terms files and reference sequence sets.

## Citation

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