save motion corrected file only during last pass

dpacheco0921 · Mar 17, 2017 · f521d31 · f521d31
1 parent c95a039
commit f521d31
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/concatenate_files.m b/concatenate_files.m
@@ -52,6 +52,6 @@
         case {'hdf5','h5'}
             h5write(filename,'/mov',Y_temp,[ones(1,nd),sum(ln(1:i-1))+1],size(Y_temp));
         case {'tif','tiff'}
-            saveastiff(cast(Y_temp,data_type),options.tiff_filename,opts_tiff);
+            saveastiff(cast(Y_temp,data_type),filename,opts_tiff);
     end         
 end
diff --git a/normcorre_batch.m b/normcorre_batch.m
@@ -379,6 +379,7 @@
             if nd == 2; mem_buffer(:,:,rem_mem-lY+1:rem_mem) = cast(Mf,data_type); end
             if nd == 3; mem_buffer(:,:,:,rem_mem-lY+1:rem_mem) = cast(Mf,data_type); end
         end
+        if it == iter
         switch lower(options.output_type)
             case 'mat'
                 if nd == 2; M_final(:,:,t:min(t+bin_width-1,T)) = Mf; end
@@ -399,6 +400,7 @@
                     saveastiff(cast(mem_buffer(:,:,1:rem_mem),data_type),options.tiff_filename,opts_tiff);
                 end
         end        
+        end
 
         % update template
         fprintf('%i out of %i frames registered, iteration %i out of %i \n',t+lY-1,T,it,iter)