add medication to section registry, atom feeds fixed

Gemfile.lock

@@ -1,6 +1,6 @@
 GIT
   remote: http://github.com/projectcypress/health-data-standards.git
-  revision: 72bb495ca6759acad843d8a0a53c7a4b7a4d1ff6
+  revision: 5cbf5d09c45e2cc6974336fc62cfc347efbb1487
   branch: develop
   specs:
     health-data-standards (0.8.0)
@@ -96,10 +96,10 @@ GEM
     eventmachine (0.12.10)
     execjs (1.3.0)
       multi_json (~> 1.0)
-    factory_girl (2.6.3)
-      activesupport (>= 2.3.9)
-    factory_girl_rails (1.7.0)
-      factory_girl (~> 2.6.0)
+    factory_girl (3.0.0)
+      activesupport (>= 3.0.0)
+    factory_girl_rails (3.0.0)
+      factory_girl (~> 3.0.0)
       railties (>= 3.0.0)
     feedzirra (0.0.31)
       activesupport (>= 3.0.8)
@@ -112,11 +112,11 @@ GEM
       rdoc (~> 3.8)
       sax-machine (~> 0.0.20)
     hashie (1.2.0)
-    heroku (2.21.2)
+    heroku (2.23.0)
       launchy (>= 0.3.2)
+      netrc (~> 0.7.1)
       rest-client (~> 1.6.1)
       rubyzip
-      term-ansicolor (~> 1.0.5)
     highline (1.6.11)
     hike (1.2.1)
     httpclient (2.2.4)
@@ -125,53 +125,54 @@ GEM
     jquery-rails (2.0.1)
       railties (>= 3.2.0, < 5.0)
       thor (~> 0.14)
-    json (1.6.5)
+    json (1.6.6)
     kaminari (0.13.0)
       actionpack (>= 3.0.0)
       activesupport (>= 3.0.0)
       railties (>= 3.0.0)
-    launchy (2.0.5)
+    launchy (2.1.0)
       addressable (~> 2.2.6)
     libv8 (3.3.10.4)
     loofah (1.0.0)
       nokogiri (>= 1.3.3)
     macaddr (1.5.0)
       systemu (>= 2.4.0)
-    mail (2.4.3)
+    mail (2.4.4)
       i18n (>= 0.4.0)
       mime-types (~> 1.16)
       treetop (~> 1.4.8)
     method_source (0.7.1)
-    mime-types (1.17.2)
-    minitest (2.11.3)
+    mime-types (1.18)
+    minitest (2.11.4)
     mongo (1.6.1)
       bson (~> 1.6.1)
-    mongoid (2.4.6)
+    mongoid (2.4.7)
       activemodel (~> 3.1)
       mongo (~> 1.3)
       tzinfo (~> 0.3.22)
-    multi_json (1.1.0)
+    multi_json (1.2.0)
     net-scp (1.0.4)
       net-ssh (>= 1.99.1)
     net-sftp (2.0.5)
       net-ssh (>= 2.0.9)
     net-ssh (2.3.0)
     net-ssh-gateway (1.1.0)
       net-ssh (>= 1.99.1)
+    netrc (0.7.1)
     nokogiri (1.4.7)
     omniauth (1.0.3)
       hashie (~> 1.2)
       rack
     omniauth-openid (1.0.1)
       omniauth (~> 1.0)
       rack-openid (~> 1.3.1)
-    orm_adapter (0.0.6)
+    orm_adapter (0.0.7)
     polyglot (0.3.3)
     pry (0.9.8.4)
       coderay (~> 1.0.5)
       method_source (~> 0.7.1)
       slop (>= 2.4.4, < 3)
-    pry-nav (0.1.0)
+    pry-nav (0.2.0)
       pry (~> 0.9.8.1)
     rack (1.4.1)
     rack-cache (1.2)
@@ -212,7 +213,7 @@ GEM
       mime-types (>= 1.16)
     rubyzip (0.9.6.1)
     sass (3.1.15)
-    sass-rails (3.2.4)
+    sass-rails (3.2.5)
       railties (~> 3.2.0)
       sass (>= 3.1.10)
       tilt (~> 1.3)
@@ -225,8 +226,7 @@ GEM
       tilt (~> 1.1, != 1.3.0)
     symbolize (4.2.0)
     systemu (2.5.0)
-    term-ansicolor (1.0.7)
-    therubyracer (0.9.10)
+    therubyracer (0.10.0)
       libv8 (~> 3.3.10)
     thin (1.3.1)
       daemons (>= 1.0.9)
@@ -237,10 +237,10 @@ GEM
     treetop (1.4.10)
       polyglot
       polyglot (>= 0.3.1)
-    turn (0.9.3)
+    turn (0.9.4)
       ansi
     tzinfo (0.3.32)
-    uglifier (1.2.3)
+    uglifier (1.2.4)
       execjs (>= 0.3.0)
       multi_json (>= 1.0.2)
     uuid (2.3.5)

app/views/entries/index.atom.builder

@@ -0,0 +1,11 @@
+atom_feed do |feed|
+
+  @entries.each do |entry|
+
+    feed.entry(entry, url: section_document_path(@record.medical_record_number, @section_name, entry.id), type: "application/xml") do |atom_entry|
+      atom_entry.link(rel: "alternate", type: Mime::XML, href: section_document_path(@record.medical_record_number, @section_name, entry))
+      atom_entry.link(rel: "alternate", type: Mime::Json, href: section_document_path(@record.medical_record_number, @section_name, entry))
+    end
+
+  end
+end

app/views/records/index.atom.builder

@@ -0,0 +1,9 @@
+atom_feed do |feed|
+  @records.each do |record|
+    feed.entry(record, url: root_feed_url(record.medical_record_number)) do |entry|
+      entry.link rel: "alternate", type: Mime::Atom, href: root_feed_url(record.medical_record_number)
+      entry.link rel: "root", type: Mime::XML, href: root_document_url(record.medical_record_number)
+      entry.title record.last + ', ' + record.first
+    end
+  end
+end

app/views/records/show.atom.builder

@@ -0,0 +1,11 @@
+atom_feed do |feed|
+  feed.entry("c32", url: root_feed_url(@record.medical_record_number), id: "/c32") do |entry|
+
+  end
+  SectionRegistry.instance.extensions.each do |section|
+    feed.entry(section.name, url: section_feed_url(@record.medical_record_number, section.path), id: "/#{section.path}") do |atom_entry|
+      atom_entry.link(rel: "alternate", type: Mime::Atom, href: section_feed_url(@record.medical_record_number, section.path))
+      atom_entry.title(section.name)
+    end
+  end
+end

config/initializers/hdata_sections.rb

@@ -17,7 +17,10 @@
 end
 sr.add_section('immunizations', 'http://projecthdata.org/extension/immunization', 'Immunizations')
 sr.add_section('medical_equipment', 'http://projecthdata.org/extension/medical-equipment', 'Medical Equipment')
-sr.add_section('medications', 'http://projecthdata.org/extension/medication', 'Medications')
+sr.add_section('medications', 'http://projecthdata.org/extension/medication', 'Medications') do |importers, exporters|
+  importers['application/xml'] = HealthDataStandards::Import::GreenC32::MedicationImporter.instance
+  exporters['application/xml'] = HealthDataStandards::Export::GreenC32::ExportGenerator.create_exporter_for(:medication)
+end
 sr.add_section('procedures', 'http://projecthdata.org/extension/procedure', 'Procedures') do |importers, exporters|
   importers['application/xml'] = HealthDataStandards::Import::GreenC32::ProcedureImporter.instance
   exporters['application/xml'] = HealthDataStandards::Export::GreenC32::ExportGenerator.create_exporter_for(:procedure)