- Saffron Walden, UK
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sanger-npg-sqyrrl Public
Forked from wtsi-npg/sqyrrlSqyrrl - an HTTP server for files hosted in iRODS
Go GNU General Public License v3.0 UpdatedJan 22, 2025 -
sanger-external-go-irodsclient Public
Forked from wtsi-npg/go-irodsclientGo iRODS Client
Go Other UpdatedJan 10, 2025 -
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sanger-npg-samtools_container Public
Forked from wtsi-npg/samtools_containerScripts to create a docker container for samtools
Shell UpdatedSep 12, 2024 -
ml_warehouse Public
Forked from wtsi-npg/ml_warehousePerl DBIx binding to a warehouse housing data from multiple LIM systems
Perl UpdatedJul 15, 2024 -
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cromwell Public
Forked from broadinstitute/cromwellScientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Scala BSD 3-Clause "New" or "Revised" License UpdatedApr 5, 2024 -
oauth2c Public
Forked from cloudentity/oauth2cUser-friendly OAuth2 CLI
Go Apache License 2.0 UpdatedMar 24, 2024 -
baton Public
Forked from wtsi-npg/batoniRODS client programs and API
C GNU General Public License v2.0 UpdatedMar 21, 2024 -
sanger-external-gocommands Public
Forked from cyverse/gocommandsiRODS Command-line Tools written in Go
Go Other UpdatedFeb 23, 2024 -
sanger-npg-perl-irods-wrap Public
Forked from wtsi-npg/perl-irods-wrapPerl iRODS Client Wrapper Library
Perl UpdatedJan 30, 2024 -
sanger-npg-irods-metadata Public
Forked from wtsi-npg/irods-metadataDescription of a subset of metadata used in WTSI iRODS
Makefile UpdatedDec 21, 2023 -
sanger-npg-npg-irods-python Public
Forked from wtsi-npg/npg-irods-pythonApplications for the management of data and metadata in iRODS
Python GNU General Public License v3.0 UpdatedDec 2, 2023 -
sanger-npg-partisan Public
Forked from wtsi-npg/partisanA Python client API for iRODS
Python GNU General Public License v3.0 UpdatedDec 1, 2023 -
sanger-npg-npg_qc Public
Forked from wtsi-npg/npg_qcQC checks and metrics for Illumina NGS data
Perl UpdatedDec 1, 2023 -
sanger-npg-containers Public
Forked from wtsi-npg/containersSingularity and Docker material
Shell UpdatedSep 25, 2023 -
sanger-npg-npg_irods Public
Forked from wtsi-npg/npg_irodsTools for managing HTS (BAM and CRAM) format files in iRODS.
Perl GNU General Public License v3.0 UpdatedSep 20, 2023 -
sanger-npg-npg_seq_pipeline Public
Forked from wtsi-npg/npg_seq_pipelineProcessing and analysis of data coming from Illumina sequencing machines
Perl UpdatedSep 13, 2023 -
sanger-npg-npg_conda Public
Forked from wtsi-npg/npg_condaNPG Conda recipes and tools
Shell UpdatedJul 25, 2023 -
sanger-npg-npg_tracking Public
Forked from wtsi-npg/npg_trackingWTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking
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artic-ncov2019 Public
Forked from artic-network/artic-ncov2019ARTIC nanopore protocol for nCoV2019 novel coronavirus
Creative Commons Attribution 4.0 International UpdatedMay 3, 2022 -
sanger-npg-npg_ml_warehouse Public
Forked from wtsi-npg/npg_ml_warehouseAnalysis results loader for the multi-lims warehouse, see ml_warehouse project for the warehouse details.
Perl UpdatedJun 16, 2021 -
primer-schemes Public
Forked from artic-network/primer-schemesPrimer schemes for real-time genome epidemiology
Python Creative Commons Attribution 4.0 International UpdatedSep 21, 2020 -
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ncov2019-artic-nf Public
Forked from connor-lab/ncov2019-artic-nfA Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
Nextflow UpdatedJul 7, 2020 -
htslib Public
Forked from samtools/htslibC library for high-throughput sequencing data formats. This is the official repository.
C Other UpdatedMar 3, 2020 -
pacgo Public
Forked from danicat/pacgoA Pac Man clone written in Go (with emojis!)
Go MIT License UpdatedNov 24, 2019 -
sanger-npg-bambi Public
Forked from wtsi-npg/bambiA set of programs to manipulate SAM/BAM/CRAM files, using HTSLIB
C GNU Affero General Public License v3.0 UpdatedSep 30, 2019 -
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wr Public
Forked from VertebrateResequencing/wrexperimental reimplementation of https://github.com/VertebrateResequencing/vr-pipe/ in go
Go GNU General Public License v3.0 UpdatedNov 12, 2018